hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14440327/chunk_1/iprscan-20080501-14440327.nocrc
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Query sequence: KIAA0007
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  80.5      2e-19   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5      15    51 ..     1    46 []     4.3    1e+02
SM00320    2/5      54   119 ..     1    46 []     0.2  4.6e+02
SM00320    3/5     122   163 ..     1    46 []    36.7  3.2e-06
SM00320    4/5     166   203 ..     1    46 []    30.6  0.00021
SM00320    5/5     206   259 ..     1    46 []     8.7       21

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 15 to 51: score 4.3, E = 1e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++    ++         +afsp++       ++a +s+Dg++r+W
    KIAA0007    15    GgSCDPLAPAGVP------CAFSPHS-----QAYFALAStDGHLRVW 50   

                   d<-*
                   +   
    KIAA0007    51 E    51   

SM00320: domain 2 of 5, from 54 to 119: score 0.2, E = 4.6e+02
                   *->t.kllrtlk..gHtgespVtsvafspdggss................
                      +++l +++ +++H + + +t++a+ p     ++++++++++++  + 
    KIAA0007    54    NnRLHQEYVpsAHLS-GTCTCLAWAPARLQAkespqrkkrkseavgm 99   

                   .dspnllasgs.DgtirlWd<-*
                   +++++lla g   g+i l++   
    KIAA0007   100 sNQTDLLALGTaVGSILLYS    119  

SM00320: domain 3 of 5, from 122 to 163: score 36.7, E = 3.2e-06
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      +++l ++l ++gH++  +V+++++++d+       +l+s+s+D++i 
    KIAA0007   122    KgELHSKLIsgGHDN--RVNCIQWHQDS------GCLYSCSdDKHIV 160  

                   lWd<-*
                    W+   
    KIAA0007   161 EWN    163  

SM00320: domain 4 of 5, from 166 to 203: score 30.6, E = 0.00021
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      t k+ +++kg ++  +V+s+++spdg      ++l+s++ +ti+lW 
    KIAA0007   166    TcKVKCKWKGDNS--SVSSLCISPDG------KMLLSAG-RTIKLWV 203  

                   <-*
                      
    KIAA0007     -     -    

SM00320: domain 5 of 5, from 206 to 259: score 8.7, E = 21
                   *->t.kllrtlkgHtgespVtsvafspdggss.......dspnllasgs.
                      t+++ r ++gH    pV+s+ f     ++++++ ++  + +++sg  
    KIAA0007   206    TkEVYRHFTGHAT--PVSSLMFTTIRPPNesqpfdgITGLYFLSGAv 250  

                   .DgtirlWd<-*
                   +D+ + +W    
    KIAA0007   251 hDRLLNVWQ    259  

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