hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14440327/chunk_1/iprscan-20080501-14440327.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0007 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08162.2.ls NUC189 domain 136.6 6.3e-38 1 PF08162.2.fs NUC189 domain 134.6 2.5e-37 1 PF00400.22.fs WD domain, G-beta repeat 81.6 5.1e-22 6 PF00400.22.ls WD domain, G-beta repeat 71.8 2.1e-18 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/6 28 51 .. 15 38 .] 15.7 0.0019 PF00400.22.ls 2/4 125 163 .. 1 38 [] 35.6 1.6e-07 PF00400.22.fs 3/6 125 163 .. 1 38 [] 33.6 1.7e-08 PF00400.22.fs 4/6 167 203 .. 1 38 [] 23.7 1.1e-05 PF00400.22.ls 3/4 167 203 .. 1 38 [] 25.6 0.00017 PF08162.2.fs 1/1 499 585 .. 1 88 [] 134.6 2.5e-37 PF08162.2.ls 1/1 499 585 .. 1 88 [] 136.6 6.3e-38 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 6, from 28 to 51: score 15.7, E = 0.0019 *->vafspdsgpllasgSrDgtikiWd<-* +afsp+s+ ++a +S Dg++++W+ KIAA0007 28 CAFSPHSQAYFALASTDGHLRVWE 51 PF00400.22.ls: domain 2 of 4, from 125 to 163: score 35.6, E = 1.6e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* k + +gH + V+c+ +++d + +l s+S+D++i W+ KIAA0007 125 LHSKlISgGHDNRVNCIQWHQD-SGCLYSCSDDKHIVEWN 163 PF00400.22.fs: domain 3 of 6, from 125 to 163: score 33.6, E = 1.7e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* k + +gH + V+c+ +++d + +l s+S+D++i W+ KIAA0007 125 LHSKlISgGHDNRVNCIQWHQD-SGCLYSCSDDKHIVEWN 163 PF00400.22.fs: domain 4 of 6, from 167 to 203: score 23.7, E = 1.1e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++k ++g +s+V+++++spd g++l+s++r tik+W KIAA0007 167 CKVKcKWkGDNSSVSSLCISPD-GKMLLSAGR--TIKLWV 203 PF00400.22.ls: domain 3 of 4, from 167 to 203: score 25.6, E = 0.00017 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++k ++g +s+V+++++spd g++l+s++r tik+W KIAA0007 167 CKVKcKWkGDNSSVSSLCISPD-GKMLLSAGR--TIKLWV 203 PF08162.2.fs: domain 1 of 1, from 499 to 585: score 134.6, E = 2.5e-37 *->IqsTVarLppalavpLLerLaerLqrrpararqllpWikavLiiHgs I++TV r+p ++ +pLL +L++rLq++p +a++++ W+k+vL+ H+s KIAA0007 499 IKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHAS 545 YLvSqPknLlkkLgsLhqilesRvstLprLlaLsGrLdllv<-* YL+++P +L+++Lg+L+q++esRv+t+++L+ L+G+L ll+ KIAA0007 546 YLSTLP-DLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLI 585 PF08162.2.ls: domain 1 of 1, from 499 to 585: score 136.6, E = 6.3e-38 *->IqsTVarLppalavpLLerLaerLqrrpararqllpWikavLiiHgs I++TV r+p ++ +pLL +L++rLq++p +a++++ W+k+vL+ H+s KIAA0007 499 IKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHAS 545 YLvSqPknLlkkLgsLhqilesRvstLprLlaLsGrLdllv<-* YL+++P +L+++Lg+L+q++esRv+t+++L+ L+G+L ll+ KIAA0007 546 YLSTLP-DLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLI 585 //