hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14422114/chunk_1/iprscan-20080501-14422114.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0006 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 83.9 4.7e-22 1 PF00018.18.fs SH3 domain 82.0 1.2e-21 1 PF00621.11.fs RhoGEF domain 66.6 1.9e-19 1 PF00169.19.fs PH domain 63.7 6.3e-19 1 PF07653.7.fs Variant SH3 domain 64.8 5.1e-18 1 PF00621.11.ls RhoGEF domain 68.3 2.2e-17 1 PF07653.7.ls Variant SH3 domain 66.6 7.6e-17 1 PF00169.19.ls PH domain 65.7 1.4e-16 1 PF00307.21.fs Calponin homology (CH) domain 62.2 5e-16 1 PF00307.21.ls Calponin homology (CH) domain 62.1 1.7e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00307.21.fs 1/1 1 108 [. 3 122 .] 62.2 5e-16 PF00307.21.ls 1/1 1 108 [. 1 122 [] 62.1 1.7e-15 PF00018.18.fs 1/1 160 214 .. 1 59 [] 82.0 1.2e-21 PF00018.18.ls 1/1 160 214 .. 1 59 [] 83.9 4.7e-22 PF07653.7.ls 1/1 161 214 .. 1 69 [] 66.6 7.6e-17 PF07653.7.fs 1/1 161 214 .. 1 69 [] 64.8 5.1e-18 PF00621.11.ls 1/1 242 417 .. 1 207 [] 68.3 2.2e-17 PF00621.11.fs 1/1 242 417 .. 1 207 [] 66.6 1.9e-19 PF00169.19.fs 1/1 447 545 .. 1 92 [] 63.7 6.3e-19 PF00169.19.ls 1/1 447 545 .. 1 92 [] 65.7 1.4e-16 Alignments of top-scoring domains: PF00307.21.fs: domain 1 of 1, from 1 to 108: score 62.2, E = 5e-16 *->ekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLcaLl e+ +++W+ s+ + ++k ++ ++f + lk+G++Lc+L+ KIAA0006 1 EEQIVTWLISLGVLESPKKT-----ICDPEEFLKSSLKNGVVLCKLI 42 nklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDiv n+l Pg+++k + ++ d+++N+n +l+ + ++++dp+D++ KIAA0006 43 NRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQ----VEIFDPDDLY 88 egnpdPDeklvltllwqLirrfq<-* +g + + +vl +l + ++ + KIAA0006 89 SGVN---FSKVLSTLLAVNKATE 108 PF00307.21.ls: domain 1 of 1, from 1 to 108: score 62.1, E = 1.7e-15 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca e+ +++W+ s+ + ++k ++ ++f + lk+G++Lc+ KIAA0006 1 --EEQIVTWLISLGVLESPKKT-----ICDPEEFLKSSLKNGVVLCK 40 LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD L+n+l Pg+++k + ++ d+++N+n +l+ + ++++dp+D KIAA0006 41 LINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQ----VEIFDPDD 86 ivegnpdPDeklvltllwqLirrfq<-* +++g + + +vl +l + ++ + KIAA0006 87 LYSGVN---FSKVLSTLLAVNKATE 108 PF00018.18.fs: domain 1 of 1, from 160 to 214: score 82.0, E = 1.2e-21 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v+A + ++++++dELs kGD+i+v +++ gWW+g l+ G+ KIAA0006 160 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLN---GR 202 eGliPsNYVepv<-* +G++PsNYV+++ KIAA0006 203 TGWFPSNYVREI 214 PF00018.18.ls: domain 1 of 1, from 160 to 214: score 83.9, E = 4.7e-22 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v+A + ++++++dELs kGD+i+v +++ gWW+g l+ G+ KIAA0006 160 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLN---GR 202 eGliPsNYVepv<-* +G++PsNYV+++ KIAA0006 203 TGWFPSNYVREI 214 PF07653.7.ls: domain 1 of 1, from 161 to 214: score 66.6, E = 7.6e-17 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a ++++ t+++e Ls++kGd+++V+ + +gwwe KIAA0006 161 IVKARFNFKQ-TNEDE------LSVCKGDIIYVT----RVEEGGWWE 196 geslggGrrrRGlvPssaveel<-* g++ +Gr+ G++Ps++v+e+ KIAA0006 197 GTL--NGRT--GWFPSNYVREI 214 PF07653.7.fs: domain 1 of 1, from 161 to 214: score 64.8, E = 5.1e-18 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a ++++ t+++e Ls++kGd+++V+ + +gwwe KIAA0006 161 IVKARFNFKQ-TNEDE------LSVCKGDIIYVT----RVEEGGWWE 196 geslggGrrrRGlvPssaveel<-* g++ +Gr+ G++Ps++v+e+ KIAA0006 197 GTL--NGRT--GWFPSNYVREI 214 PF00621.11.ls: domain 1 of 1, from 242 to 417: score 68.3, E = 2.2e-17 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl +l TEk+Y ++L l+ +y++pL+ + L+ ++ ++ KIAA0006 242 VLQNILDTEKEYAKELQSLLVTYLRPLQSNN-----NLSTVEVTSLL 283 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+ +f++++ + +Le++ + + + +G ++l+l KIAA0006 284 GNFEEVCTFQQTLCQ-ALEECSKFP-----------ENQHKVGGCLLSLM 321 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +f ++Y +Yc+n+p+A+++l++ ++ + +f ++ +ass g KIAA0006 322 PHFKSMYLAYCANHPSAVNVLTQ-----HSDELEQFMENQGASSP-G--- 362 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L + L+kP R+ +Y LL+eL h +++++d ka+ a KIAA0006 363 ---ILILTTNLSKPFMRLEKYVTLLQELERHMED--THPDHQDILKAIVA 407 lqdlaksiNe<-* ++l+ + + KIAA0006 408 FKTLMGQCQD 417 PF00621.11.fs: domain 1 of 1, from 242 to 417: score 66.6, E = 1.9e-19 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl +l TEk+Y ++L l+ +y++pL+ + L+ ++ ++ KIAA0006 242 VLQNILDTEKEYAKELQSLLVTYLRPLQSNN-----NLSTVEVTSLL 283 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+ +f++++ + +Le++ + + + +G ++l+l KIAA0006 284 GNFEEVCTFQQTLCQ-ALEECSKFP-----------ENQHKVGGCLLSLM 321 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +f ++Y +Yc+n+p+A+++l++ ++ + +f ++ +ass g KIAA0006 322 PHFKSMYLAYCANHPSAVNVLTQ-----HSDELEQFMENQGASSP-G--- 362 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L + L+kP R+ +Y LL+eL h +++++d ka+ a KIAA0006 363 ---ILILTTNLSKPFMRLEKYVTLLQELERHMED--THPDHQDILKAIVA 407 lqdlaksiNe<-* ++l+ + + KIAA0006 408 FKTLMGQCQD 417 PF00169.19.fs: domain 1 of 1, from 447 to 545: score 63.7, E = 6.3e-19 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi vi + ++++ +++++ ++Ry++Lf++vL++ +++ +++ ++g+i KIAA0006 447 VIFMSQVMVQYgACEEKEERYLMLFSNVLIMLSASPrmsgFIYQGKI 493 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa p+ g vt+++++++++++Fei+ ++ e++++++++ ++ +eW+++++++ KIAA0006 494 PIAGTVVTRLDEIeGNDCTFEITGnTVERIVVHCNNNQDFQEWLEQLNRL 543 ir<-* ir KIAA0006 544 IR 545 PF00169.19.ls: domain 1 of 1, from 447 to 545: score 65.7, E = 1.4e-16 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi vi + ++++ +++++ ++Ry++Lf++vL++ +++ +++ ++g+i KIAA0006 447 VIFMSQVMVQYgACEEKEERYLMLFSNVLIMLSASPrmsgFIYQGKI 493 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa p+ g vt+++++++++++Fei+ ++ e++++++++ ++ +eW+++++++ KIAA0006 494 PIAGTVVTRLDEIeGNDCTFEITGnTVERIVVHCNNNQDFQEWLEQLNRL 543 ir<-* ir KIAA0006 544 IR 545 //