hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14371716/chunk_1/iprscan-20080501-14371716.nocrc
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Query sequence: KIAA0003
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00147.8.fs Fibrinogen beta and gamma chains, C-term   264.0    3.5e-77   1
PF00147.8.ls Fibrinogen beta and gamma chains, C-term   265.8    7.8e-77   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00147.8.ls   1/1     308   522 ..     1   272 []   265.8  7.8e-77
PF00147.8.fs   1/1     310   522 ..     1   272 []   264.0  3.5e-77

Alignments of top-scoring domains:
PF00147.8.ls: domain 1 of 1, from 308 to 522: score 265.8, E = 7.8e-77
                   *->spkDCsdilqkRPGgktSPPsGlYtIqPdgakekpleVYCDMeTdGG
                        +DC d++q   G   S   G YtI+ +     p +V+C M+  GG
    KIAA0003   308    PFRDCADVYQA--GFNKS---GIYTIYINNMP-EPKKVFCNMDVNGG 348  

                   GWTVfQrRqDGslnFyRnWkdYkeGFGnlstsgtGkkYCglpgEFWLGNd
                   GWTV+Q R+DGsl+F R Wk+Yk GFGn+s            gE+WLGN+
    KIAA0003   349 GWTVIQHREDGSLDFQRGWKEYKMGFGNPS------------GEYWLGNE 386  

                   kihlLTkqgsipyeLRveLeDwnGetvyAlYdkFtVgdeankYrLsvsgY
                    i  +T+q   +y LR+eL Dw G+ +y +Yd F++g+e+  YrL + g 
    KIAA0003   387 FIFAITSQR--QYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGH 434  

                   sGGtAGnALveGasqlvtagd..smtyHNGmfFSTyDrDNDgWsTtspsg
                    G               tag+++s+  H G  FST D DND         
    KIAA0003   435 TG---------------TAGKqsSLILH-GADFSTKDADND-----NCMC 463  

                   nCAesyggGRGaWWynsChaANLNGrYYyGgtyspqEmaphGtDnGvvWa
                    CA+   gG   WW+++C  +NLNG  Y  g+++          nG+ W 
    KIAA0003   464 KCALMLTGG---WWFDACGPSNLNGMFYTAGQNHGK-------LNGIKWH 503  

                   tWkGsnqAqPGGYwySmkfaeMKiRPr<-*
                   ++kG          yS++ ++M+iRP+   
    KIAA0003   504 YFKGP--------SYSLRSTTMMIRPL    522  

PF00147.8.fs: domain 1 of 1, from 310 to 522: score 264.0, E = 3.5e-77
                   *->spkDCsdilqkRPGgktSPPsGlYtIqPdgakekpleVYCDMeTdGG
                        +DC d++q   G   S   G YtI+ +     p +V+C M+  GG
    KIAA0003   310    --RDCADVYQA--GFNKS---GIYTIYINNMP-EPKKVFCNMDVNGG 348  

                   GWTVfQrRqDGslnFyRnWkdYkeGFGnlstsgtGkkYCglpgEFWLGNd
                   GWTV+Q R+DGsl+F R Wk+Yk GFGn+s            gE+WLGN+
    KIAA0003   349 GWTVIQHREDGSLDFQRGWKEYKMGFGNPS------------GEYWLGNE 386  

                   kihlLTkqgsipyeLRveLeDwnGetvyAlYdkFtVgdeankYrLsvsgY
                    i  +T+q   +y LR+eL Dw G+ +y +Yd F++g+e+  YrL + g 
    KIAA0003   387 FIFAITSQR--QYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGH 434  

                   sGGtAGnALveGasqlvtagd..smtyHNGmfFSTyDrDNDgWsTtspsg
                    G               tag+++s+  H G  FST D DND         
    KIAA0003   435 TG---------------TAGKqsSLILH-GADFSTKDADND-----NCMC 463  

                   nCAesyggGRGaWWynsChaANLNGrYYyGgtyspqEmaphGtDnGvvWa
                    CA+   gG   WW+++C  +NLNG  Y  g+++          nG+ W 
    KIAA0003   464 KCALMLTGG---WWFDACGPSNLNGMFYTAGQNHGK-------LNGIKWH 503  

                   tWkGsnqAqPGGYwySmkfaeMKiRPr<-*
                   ++kG          yS++ ++M+iRP+   
    KIAA0003   504 YFKGP--------SYSLRSTTMMIRPL    522  

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