Gene/Protein Characteristic Table for KIAA1165
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Product ID ORK00753
Accession No AB032991
Description Nedd4 family interacting protein 2
Clone name hk01631
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4415 bp)
Predicted protein sequence (284 aa)
Flexi ORF Clone FXC00753
Source Human adult brain
Rouge ID mKIAA1165 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4415 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3560 bp
Genome contig ID gi51511729f_78853496
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
AATTTTAATAAACAAAATATCATCTTTTTGAAAAT
Flanking genome sequence
(174717 - 174766)
----+----*----+----*----+----*----+----*----+----*
AATTTATGTTCATTTCTACTTTGTAAAGTATCATTGGTCACCTACGTCAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 13 f 78953496 79028211 8 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 284 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAC77372 1.7e-100 100.0 putative NFkB a...
Homo sapiens
Q9NV92 3.2e-100 99.6 NEDD4 family-in...
Homo sapiens
CAH93486 5.2e-99 98.9 hypothetical pr...
Pongo abelii
XP_522688 7.4e-99 98.9 similar to puta...
Pan troglodytes
XP_001092556 9.5e-97 97.2 Nedd4 family in...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
None - - - - -

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 179 GIFMLAFFMAFIFNWLGFCLSFC 201 PRIMARY 23
2 210 YGAICGFGLSLIKWILIVRFSDY 232 PRIMARY 23
3 239 GQYWLWWIFLVLGLLLFFRGFVN 261 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGATGTGGAAGTGTGAACCTG
Primer_r GCAACCCCAACCTAATTTCAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 13
Experimental conditions
Panel name GeneBridge 4
Primer_f AGATGTGGAAGTGTGAACCTG
Primer_r GCAACCCCAACCTAATTTCAC
PCR product length 152 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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