Gene/Protein Characteristic Table for KIAA0078
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK01957
Accession No D38551
Description RAD21 cohesin complex component
Clone name ha01237
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (3647 bp)
Predicted protein sequence (635 aa)
Flexi ORF Clone FXC01957
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0078 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 3647 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1567 bp
Genome contig ID gi51511724r_117827355
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 8 r 117927355 117956182 14 99.5 Perfect prediction
Features of the protein sequence

Length: 635 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O60216 3.2e-208 100.0 Double-strand-b...
Homo sapiens
XP_001094435 3.6e-208 99.8 RAD21 homolog i...
Macaca mulatta
CAA66940 1e-207 99.8 HR21spA [Homo s...
Homo sapiens
XP_539142 2.3e-206 98.7 similar to Doub...
Canis lupus fam...
XP_001496357 2.9e-206 98.7 similar to Doub...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR006910 5 115 PF04825 Rad21/Rec8 like protein
IPR006909 578 632 PF04824 Rad21/Rec8 like protein
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 17
Experimental conditions
Panel name Stanford G3
PCR product length 171 bp
PCR conditions 95 °C15 sec64 °C120 sec35 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT