Gene/Protein Characteristic Table for KIAA0081
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Product ID ORK00399
Accession No D42039
Description mesoderm development candidate 2, transcript variant 1
Clone name ha01009s1
Vector information
The cDNA fragment was originally inserted at the EcoRV-NotI ...
cDNA sequence DNA sequence (4174 bp)
Predicted protein sequence (235 aa)
Flexi ORF Clone FXC00399
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0081 by Kazusa Mouse cDNA Project
Note We replaced ha01009, former representative clones for KIAA0081 with ha01009s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 4174 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3466 bp
Genome contig ID gi51511731r_78955150
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
GATCTAATAAATTTGGATGATATCTTTTGACTATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATTATGAAACCTGTATCAGATATACACATCTTTCCTTCTTCATCCTCAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 r 79055150 79069190 3 99.1 Perfect prediction
Features of the protein sequence
Description

Length: 235 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q14696 3.7e-89 100.0 Mesoderm develo...
Homo sapiens
BAE87150 5.3e-86 97.0 unnamed protein...
Macaca fascicularis
XP_001928898 2.6e-77 88.0 similar to Meso...
Sus scrofa
Q3T0U1 4.5e-76 86.8 Mesoderm develo...
Bos taurus
BAC27617 2.5e-67 83.8 unnamed protein...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
None - - - - -

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 11 AVVLLCASDLLLLLLLLPPPG 31 PRIMARY 21
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name Genebridge 4
Primer_f ACTGAGGGGAGCCAACATAAG
Primer_r TTAGTAGAGACAGGGCTTCAC
PCR product length 198 bp
PCR conditions 95 °C15 sec62 °C120 sec30 cycles
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