Gene/Protein Characteristic Table for KIAA0034
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Product ID ORK04587
Accession No D21260
Description clathrin, heavy chain (Hc), transcript variant 1
Clone name ha00931
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (6111 bp)
Predicted protein sequence (1685 aa)
Flexi ORF Clone FXC04587
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0034 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 6111 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 911 bp
Genome contig ID gi51511734f_54952103
PolyA signal sequence
Flanking genome sequence
(174805 - 174854)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 17 f 55052103 55126906 32 99.8 Perfect prediction
Features of the protein sequence

Length: 1685 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q00610 0 100.0 Clathrin heavy ...
Homo sapiens
XP_537700 0 99.9 similar to Clat...
Canis lupus fam...
Q68FD5 0 99.9 Clathrin heavy ...
Mus musculus
P49951 0 99.9 Clathrin heavy ...
Bos taurus
XP_001135961 0 99.9 clathrin heavy ...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001473 29 66 PF01394 Clathrin propeller
IPR001473 70 104 PF01394 Clathrin propeller
IPR001473 112 143 PF01394 Clathrin propeller
IPR001473 158 197 PF01394 Clathrin propeller
IPR001473 208 244 PF01394 Clathrin propeller
IPR001473 263 298 PF01394 Clathrin propeller
IPR001473 306 340 PF01394 Clathrin propeller
IPR015348 341 364 PF09268 Clathrin
IPR000547 547 689 PF00637 Clathrin
IPR000547 696 838 PF00637 Clathrin
IPR000547 843 982 PF00637 Clathrin
IPR000547 989 1134 PF00637 Clathrin
IPR000547 1138 1279 PF00637 Clathrin
IPR000547 1284 1430 PF00637 Clathrin
IPR000547 1433 1576 PF00637 Clathrin
HMMSmart IPR000547 547 689 SM00299 Clathrin
IPR000547 696 838 SM00299 Clathrin
IPR000547 843 982 SM00299 Clathrin
IPR000547 989 1134 SM00299 Clathrin
IPR000547 1138 1279 SM00299 Clathrin
IPR000547 1284 1430 SM00299 Clathrin
IPR000547 1433 1592 SM00299 Clathrin
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 17
Experimental conditions
Panel name Genebridge 4
PCR product length 116 bp
PCR conditions 95 °C15 sec52 °C60 sec30 cycles
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