Gene/Protein Characteristic Table for KIAA1797
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Product ID ORK05712
Accession No AB058700
Description focadhesin
Clone name fj20494
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4195 bp)
Predicted protein sequence (1281 aa)
Source Human fetal brain
Rouge ID mKIAA1797 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4195 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 319 bp
Genome contig ID gi89161216f_20710293
PolyA signal sequence
(AGTAAA,-17)
+----*----+----*----+----*----+----
TTCTCCCTGCTAAATTCCAGTAAAATAATGTTGTC
Flanking genome sequence
(275656 - 275705)
----+----*----+----*----+----*----+----*----+----*
AATTTTGTGCGTGTGACTTTTGTTTTAAGGCATGGGGGAAGGTGCCAGAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 9 f 20810293 20985947 32 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 1281 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAN17740 0 100.0 hypothetical pr...
Homo sapiens
XP_001151311 0 99.5 hypothetical pr...
Pan troglodytes
XP_001151382 0 99.5 hypothetical pr...
Pan troglodytes
XP_001151442 0 99.5 hypothetical pr...
Pan troglodytes
XP_538678 0 90.0 similar to CG35...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
None - - - - -

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1145 ALDEALDFFLLIFATAVVAWADH 1167 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACTCTCCTTCCCAATAGCATG
Primer_r AGAACTCTCAAGGACAGCAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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