Gene/Protein Characteristic Table for KIAA0113
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Product ID ORK00020
Accession No D30755
Description TNFAIP3 interacting protein 1, transcript variant 5
Clone name ha01652s1
Vector information
The cDNA fragment was originally inserted at the EcoRV-NotI ...
cDNA sequence DNA sequence (2677 bp)
Predicted protein sequence (636 aa)
Flexi ORF Clone FXC00020
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0113 by Kazusa Mouse cDNA Project
Note We replaced ha01652, former representative clones for KIAA0113 with ha01652s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 2677 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 766 bp
Genome contig ID gi51511721r_150289701
PolyA signal sequence
(CATAAA,-24)
+----*----+----*----+----*----+----
CGAATCATGGACATAAATCCAAGTTGAAGAAGATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACATTCTGACTCATGTTCATTTATGCGCTAATGTTCCCCTGTCAACCCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 5 r 150389701 150424849 17 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 636 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAG42154 3.5e-187 99.8 virion-associat...
Homo sapiens
AAH12133 4.8e-187 99.8 TNFAIP3 interac...
Homo sapiens
XP_001167590 1.6e-186 99.5 Nef-associated ...
Pan troglodytes
BAF83688 2.1e-186 99.5 unnamed protein...
Homo sapiens
BAF48799 5.3e-185 100.0 Nef-associated ...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 5
Experimental conditions
Panel name Stanford G3
Primer_f CCCCTTCCTTCAAAACCTCCC
Primer_r AGACAAACCCACACTTCCCAC
PCR product length 159 bp
PCR conditions 95 °C15 sec66 °C120 sec30 cycles
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