Table 2A Supplement. Abundant tags (more than 50) in the root library

Tag count Tag EST Definition of the similar sequence Organism Accession E-value
1232 CATGAGCTATGGTT MWM200f03_f metallothionein-like protein class II Fagus sylvatica emb|CAA10232.1| 2.00E-26
669 CATGTGTGATTTAC MPD006h02_f aquaporin protein PIP1;1 Medicago truncatula gb|AAK66766.1|AF386739_1 e-128
491 CATGTGTATCGCAA MWM209g09_f extensin-like protein Glycine max gb|AAM75351.1| 6.00E-09
455 CATGTGATCTGGTG SSQS106c02_f plasma membrane integral protein ZmPIP2-7 Zea mays gb|AAK26763.1| 2.00E-34
382 CATGATGAGCGTTA SPD080h04_f "Glyceraldehyde 3-phosphate dehydrogenase, cytosolic" Pisum sativum sp|P34922|G3PC_PEA 1.00E-15
316 CATGCTGTGTAATT CB826748 No similarity      
297 CATGTAACTTTAGT MR025e04_f protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Arabidopsis thaliana ref|NP_190966.1| 2.00E-29
271 CATGCTTGTCCAAA MWM071e03_f No similarity      
260 CATGGTGAATGGAA SPD099g05_f cytosolic ascorbate peroxidase Cucumis sativus dbj|BAA13671.1| 2.00E-04
229 CATGGTTGGATGGA MR042d03_f putative ripening related protein Cicer arietinum emb|CAD31716.1| 2.00E-12
209 CATGGCCGATGTTG BG662376.1 glycine-rich RNA binding protein 1 Pelargonium x hortorum gb|AAB63581.1| 7.00E-38
207 CATGAGTGATGTAC GENLf040f08 PR10-1 protein Medicago truncatula emb|CAA69931.1| 6.00E-24
199 CATGGGTGTTTTCA BG662154.1 pathogenesis-related protein 1 (PvPR1) Phaseolus vulgaris gi|21044|emb|CAA43637.1| 1.00E-20
170 CATGTAAGTTATGT MSQL062b06_f water-selective transport intrinsic membrane protein 1; LIMP1 Lotus japonicus gb|AAF82790.1|AF275315_1 e-131
167 CATGGAAGGACTAC GNf008e01 elongation factor 1-alpha Pisum sativum sp|Q41011|EF1A_PEA 7.00E-27
165 CATGATGTTCTGTT SPD096d09_f aquaporin protein PIP1;1 Medicago truncatula gb|AAK66766.1| 2.00E-52
162 CATGTTGTAATCAT MWM233f05_f Asparagine synthetase glutamine-hydrolyzing sp|P49093|ASN2_LOTJA 3.00E-36
162 CATGTGCTGGCAAT SPDL081e02_f Repetitive proline-rich cell wall protein 2 precursor Glycine max sp|P13993|PRP2_SOYBN 6.00E-25
160 CATGTTGTGCTTCT GNf056h09 INDOLE-3-ACETIC ACID INDUCED PROTEIN ARG2 Vigna radiata sp|P32292|ARG2_PHAAU 1.00E-14
157 CATGTGTTTTGCCT MFB082a12_f MtN5 Medicago truncatula emb|CAA75593.1| 5.00E-25
148 CATGAGAGCGAAGT GNLf020c06 No similarity      
146 CATGCCGGGATTTT SPD050b03_f 60S ribosomal protein L15 Arabidopsis thaliana ref|NP_193405.1| 8.00E-20
144 CATGATGTAAGCGC SSQS102a05_f No similarity      
143 CATGACACGCACAA MR053d09_f metallothionein-like protein class II Fagus sylvatica emb|CAA10232.1| 2.00E-26
139 CATGGTCAATCTGA SPDL044f10_f S-adenosyl-L-methionine synthetase Dendrobium crumenatum gb|AAL16064.1| 2.00E-43
137 CATGTGATGAGATA MPD077b05_f CYP1 Vigna radiata dbj|BAB82452.1| 3.00E-81
137 CATGTATTTGCTTT MR012d02_f extensin Cicer arietinum emb|CAA07235.1| 6.00E-11
137 CATGTATTTGCTTT GNf049h11 expressed protein Arabidopsis thaliana ref|NP_199585.1| 5.00E-09
136 CATGTGCTGCAGGC AV425283 putative ribosomal protein S29 Oryza sativa (japonica cultivar-group) gb|AAP68880.1| 1.00E-27
131 CATGCAGATCTTCG BI419880.1 polyubiquitin 4.4 Phaseolus vulgaris pir||T12035 1.00E-75
128 CATGCTTGGTCTTG BU494082.1 wheat adenosylhomocysteinase-like protein Oryza sativa (japonica cultivar-group) gb|AAO72664.1| 1.00E-72
123 CATGTTACCGTGTT SPDL032e09_f S-adenosyl-L-methionine synthetase Dendrobium crumenatum gb|AAL16064.1| 1.00E-24
123 CATGACCCACCTAA MR099c12_f putative aquaporin-1 Phaseolus vulgaris gb|AAB72149.1| 9.00E-18
119 CATGGTGTGAGGCC SPD029h09_f "Glutamine synthetase, cytosolic isozyme"   sp|Q42899|GLN1_LOTJA 3.00E-20
118 CATGGGGGAGGAGC MFB065h04_f Eukaryotic translation initiation factor 5A Senecio vernalis sp|Q9SC12|IF5A_SENVE 5.00E-35
117 CATGATGCTTGCGA SPD081e03_f unknown protein Oryza sativa gb|AAK14411.1| 4.00E-41
115 CATGTAATGGAATG MR068f10_f unknown Arabidopsis thaliana gb|AAM64738.1| 1.00E-40
113 CATGAGGATGCTTA SPDL100f09_f "peroxidase (EC 1.11.1.7) 2, cationic" Glycine max pir||T06227 5.00E-45
110 CATGTTGGTTTTGC MR048d02_f membrane transporter Lotus japonicus emb|CAC35729.1| 7.00E-45
110 CATGCTATCAAGAG SPD026f09_f 60S RIBOSOMAL PROTEIN L44 Gossypium hirsutum sp|Q96499|RL44_GOSHI 8.00E-08
107 CATGGTCTTTTGGT MPDL091a09_f IgE-dependent histamine-releasing factor homolog Medicago sativa pir||S22489 4.00E-22
106 CATGTTTCATTCCA SPD100c08_f water-selective transport intrinsic membrane protein 1; LIMP1 Lotus japonicus gb|AAF82790.1| 2.00E-57
105 CATGCCGACGCGTT MWM198f07_r ribosomal protein L27-5 Pisum sativum pir||T06431 2.00E-58
105 CATGATGGAAAGAA SPD089d09_f aquaporin 2 Samanea saman gb|AAC17529.1| 3.00E-28
101 CATGCATTACTGTA MR080c09_f extensin=nodule-specific proline-rich protein "Vicia faba=broadbeans, root nodules, Peptide Partial, 116 aa" gb|AAB28462.1| 3.00E-12
100 CATGGTTTGTTCTG SPDL073c01_f P0475H04.11 Oryza sativa (japonica cultivar-group) ref|NP_914175.1| 4.00E-21
100 CATGAGGAAGTTTG SPD017h07_f 60S ribosomal protein L35 Euphorbia esula sp|Q9M5L0|RL35_EUPES 1.00E-20
99 CATGCTGCTCCTGG AW164138.1 putative nitrilase-associated protein Arabidopsis thaliana gb|AAM64577.1| 1.00E-10
96 CATGATGCATAACA MWM066d01_f ribosomal protein L32 Mercurialis annua gb|AAK43709.1| 5.00E-51
95 CATGTTGTCAGGGT SPDL099d04_f "ribosomal protein S26, cytosolic" imported pir||T50822 5.00E-42
93 CATGGACCATTGGC SPD094g06_f 60S ribosomal protein L10 Vitis riparia sp|Q9SPB3|RL10_VITRI 1.00E-23
90 CATGCAGATGTGTG SPD065a06_f HMG1/2-like protein Glycine max sp|P26585|HMGL_SOYBN 1.00E-62
89 CATGTATTGTTGCA AW720691 resistant specific protein-2 Vigna radiata dbj|BAC22500.1| 3.00E-60
89 CATGCAGATTTGTG SPD094c05_f hydroxyproline-rich glycoprotein 1 Pisum sativum pir||T06789 1.00E-36
89 CATGGTTGAAGTGA BI418872 cytochrome c oxidase-related Arabidopsis thaliana ref|NP_195496.1| 2.00E-27
89 CATGAGAGCCAAGT no match        
88 CATGTATGAATGAT MPDL014d12_f No similarity      
87 CATGTGTGTAGCAG MWL054g07_f PR10-1 protein Medicago truncatula emb|CAA69931.1| 4.00E-14
86 CATGCCCAAGGATA SPD001h07_f histone H3 Medicago sativa pir||S04521 7.00E-29
86 CATGTCAAAAAAAA          
84 CATGCACCACCACC SPD016b12_f ribosomal protein L27a Petunia x hybrida gb|AAD13388.1| 4.00E-61
83 CATGAGACCTGATT SPD044f05_f arabinogalactan-protein (AGP15) Arabidopsis thaliana ref|NP_196735.1| 5.00E-06
82 CATGCGCATCCGTG SPD014d11_f 40S ribosomal protein S16 Euphorbia esula gb|AAF34799.1| 3.00E-60
82 CATGTTTTGATGAA MR066h04_f expressed protein Arabidopsis thaliana ref|NP_564277.1| 3.00E-17
81 CATGTTTGTACCCT SPD066d11_f extensin Cicer arietinum emb|CAA07235.1| 4.00E-14
80 CATGTGAGATAGGG MWM149b11_f lipoxygenase Vicia faba pir||T12142 2.00E-60
79 CATGTGGAAGTTTA SPDL089h03_f ferredoxin-NADP reductase Pisum sativum pir||T06773 6.00E-48
77 CATGGCGAACCACT SPD055d11_f ubiquitin/ribosomal protein S27a fusion protein Lupinus albus pir||S40240 3.00E-63
77 CATGTCAAGGACTA SPDL081e12_f "Fructose-bisphosphate aldolase, cytoplasmic isozyme" Cicer arietinum sp|O65735|ALF_CICAR 2.00E-50
77 CATGCTCTATGAGC SPDL100d09_f methionine synthase Glycine max gb|AAQ08403.1| 8.00E-47
77 CATGTAGAAGTGAA SPD094g01_f protease inhibitor Sesbania rostrata emb|CAD29731.1| 2.00E-27
77 CATGTTAAAAAAAA          
76 CATGTTCAAAAAAA          
75 CATGCCGTGTCAGA SPD022b12_f Histone H2B Gossypium hirsutum sp|O22582|H2B_GOSHI 4.00E-60
75 CATGGCGAACCATT SPDL069a08_f ubiquitin/ribosomal protein S27a fusion protein Lupinus albus pir||S40240 4.00E-59
75 CATGTAATGTGGTT MPD100f01_f Alcohol dehydrogenase Malus x domestica sp|P48977|ADH_MALDO 1.00E-50
73 CATGTGCTTTGAGA MWM158c09_f fructokinase-like protein Cicer arietinum emb|CAD31714.1| 6.00E-71
73 CATGCTGGTTATTA SPD046a02_f ribosomal protein L21 imported pir||T50602 1.00E-42
73 CATGGCACTTTATA no match        
73 CATGTGGTTCTCGT BI417968        
72 CATGATGAGCTCTA SPDL043a06_f Calreticulin precursor Ricinus communis sp|P93508|CRTC_RICCO 3.00E-39
72 CATGAAAAAAAAAA          
71 CATGGGTTTGCCAT MWM194h12_f glutamate-rich protein Lotus corniculatus var. japonicus dbj|BAD11133.1| 6.00E-33
71 CATGATGAATTTTG SPD002e06_f putative membrane protein Solanum tuberosum emb|CAC37356.1| 2.00E-27
71 CATGGATGCTTTTG SPDL032g04_f No similarity      
70 CATGATGTGAATGT SPDL078g09_f nodule-enhanced sucrose synthase Pisum sativum gb|AAC28107.1| 2.00E-57
69 CATGAATGGAAAAT SPDL042c03_f Asparagine synthetase glutamine-hydrolyzing sp|P49092|ASN1_LOTJA 6.00E-40
69 CATGGATATTGTTG GNf019g08 "eukaryotic translation initiation factor SUI1, putative" Arabidopsis thaliana ref|NP_568818.1| 3.00E-21
69 CATGCATTGATGCC SPDL020g12_f "Malate dehydrogenase, cytoplasmic" Medicago sativa sp|O48905|MDHC_MEDSA e-153
68 CATGGCAAGAGTTG BI419234 40S ribosomal protein S15A Arabidopsis thaliana ref|NP_172256.1| 2.00E-67
68 CATGATCTCTAACT MFB018g12_f hypothetical protein Arabidopsis thaliana ref|NP_196624.1| 1.00E-16
67 CATGCCAAATTGTA MWM104g10_r MYST-type acetyltransferase Solanum chacoense gb|AAQ24535.1| 2.00E-74
67 CATGTGGGTGACTC no match        
66 CATGTCCCTATTAA no match        
66 CATGTGGTGTTCGG no match        
65 CATGTTGGTTGGGA SPDL093f05_f Ran-binding protein Arabidopsis thaliana ref|NP_172194.1| 4.00E-82
65 CATGTGCCAGCCAT MR093d06_f "Glutamine synthetase, cytosolic isozyme" Lotus japonicus sp|Q42899|GLN1_LOTJA 4.00E-40
65 CATGATGATTTCAT SPDL037d07_f dTDP-glucose 4-6-dehydratase homolog D18 Arabidopsis thaliana pir||S58282 3.00E-22
64 CATGTACGCCTCAG SPDL071h02_f putative protein; protein id: At4g23630.1 Arabidopsis thaliana ref|NP_194094.1| 1.00E-36
64 CATGAGACCTTGAG BI421057 ribosomal protein small subunit 28 kDa Helianthus annuus gb|AAM78552.1| 1.00E-20
64 CATGTTGAAATTGA MWL061e06_f exocyst subunit EXO70 family protein Arabidopsis thaliana ref|NP_177391.1| 2.00E-07
64 CATGTTAGGGGTGT MR008g03_f No similarity      
63 CATGATTAAACTAA no match        
62 CATGGGATTCAGCT SPD010h11_f putative acidic ribosomal protein P1a Oryza sativa (japonica cultivar-group) dbj|BAD09458.1| 8.00E-36
62 CATGAAGGAGCTGA MPDL049a09_f dehydrin   pir||T11744 9.00E-29
62 CATGGGAGAATCAA MFBL037h08_f ribosomal protein L17-1 Poa secunda gb|AAG49551.1| 3.00E-28
62 CATGTTAGTTGTGC SPD054a03_f 60S RIBOSOMAL PROTEIN L34   sp|P41098|RL34_TOBAC 7.00E-11
62 CATGCAGACTGTTG no match        
61 CATGACCAACCAGG SPD080g11_f ribosomal protein S3a Cicer arietinum emb|CAD56219.1| 7.00E-41
61 CATGATGCGTTGAA MR054h04_f expressed protein Arabidopsis thaliana ref|NP_566131.2| 2.00E-14
60 CATGGCTGTGGTGT MFB048e07_f ubiquitin-conjugation enzyme Glycine max gb|AAN03469.1| 2.00E-67
60 CATGTGTTATGTAT SPD037d01_f putative aquaporin PIP1-1 Vitis berlandieri x Vitis rupestris gb|AAF71817.1| 3.00E-64
60 CATGGCTGGCAAGG MWM073a12_f PR10-1 protein Medicago truncatula emb|CAA69931.1| 3.00E-53
60 CATGCTAGCACCGT MWM249c12_r 60S ribosomal protein L2 Nicotiana tabacum gb|AAF85800.1| 4.00E-33
60 CATGTCATCTGATG MRL030b05_f putative copper chaperone Oryza sativa (japonica cultivar-group) dbj|BAD05334.1| 2.00E-09
60 CATGCAGGCGCACG MFB022e11_f fiber protein Fb15 Gossypium barbadense gb|AAP34362.1| 1.00E-08
59 CATGTGACTTGGAG MWM058g07_f putative translation elongation factor eEF-1 beta' chain Oryza sativa (japonica cultivar-group) dbj|BAC22427.2| 3.00E-40
59 CATGTACAACTTGT MWM037g04_f 60S ribosomal protein L19 Capsicum annuum gb|AAR83877.1| 2.00E-06
58 CATGTGCGAGTACT SPD037c09_f 40S ribosomal protein S17 Capsicum annuum gb|AAR83866.1| 2.00E-26
57 CATGCAACTTCTTC SPD075b06_f 14-3-3-like protein Pisum sativum emb|CAB42546.2| 3.00E-57
56 CATGTCTGCTATGG MFBL041h01_f Eukaryotic translation initiation factor 5A-4 Solanum tuberosum sp|P56336|IF54_SOLTU 2.00E-58
56 CATGTAGGTTTCAG SPDL082b09_f proline dehydrogenase Glycine max gb|AAR86686.1| 6.00E-45
56 CATGGTGGGTTCAA MFBL017e09_f proline-rich family protein Arabidopsis thaliana ref|NP_193655.1| 9.00E-22
56 CATGCGTTTGTTCC MFB073a01_f Drm3 Pisum sativum gb|AAM62421.1| 1.00E-06
56 CATGTGTGTATGGT AW719605 EARLY NODULIN 36B Glycine max sp|Q02919|N36B_SOYBN 1.00E-04
55 CATGAATCTTTTTG MPD054g04_f No similarity      
55 CATGTCTTCCTTGA no match        
54 CATGGGGGAGTAAA GENf069a01 alcohol dehydrogenase 1; ADH1 Lotus corniculatus gb|AAO72531.1| 7.00E-43
53 CATGAGGCAATGTT BI419574 40S ribosomal protein S7 Avicennia marina gi|4128206|gb|AAD03501.1| 2.00E-56
53 CATGATCGGAATCG MWM177h09_r metallothionein-like protein class II Fagus sylvatica emb|CAA10232.1| 1.00E-26
53 CATGATGAAGCTCC GENLf066a04 No similarity      
53 CATGGGGCTGGTTG BU494435 No similarity      
52 CATGAAGGCTGCTG SPD061c05_f 40S ribosomal protein S9 Arabidopsis thaliana ref|NP_198801.1| 5.00E-53
52 CATGCAGGTCTGAG SPDL096a03_f enolase Lupinus luteus emb|CAB75428.1| 8.00E-53
52 CATGAAGGGTTGGA SPDL080c12_f glutathione peroxidase   pir||S33618 4.00E-51
52 CATGTTGTTCATAT MWM241c04_f root-specific protein RCc3   pir||S53012 7.00E-06
52 CATGCAAAAAAAAA          
52 CATGCTCAAAGTTT no match        
52 CATGCTCCACCTAA no match        
51 CATGATGGGAGAGA MR067c01_f ribosomal protein S27 Arabidopsis thaliana pir||T47903 8.00E-31
51 CATGTTAAGGGCGA SPDL079c12_f class VII chitinase precursor Gossypium hirsutum gb|AAP80800.1| 5.00E-11
51 CATGGTACTTGCAA MWL021d06_f resistant specific protein-2 Vigna radiata dbj|BAC22500.1| 7.00E-10
50 CATGGCGATTTGTG MFB033f12_f copia-related retroelement pol polyprotein Arabidopsis thaliana ref|NP_179558.1| 2.00E-53
50 CATGGGATGTCAGC MFB012g05_f ADP-ribosylation factor Arabidopsis thaliana ref|NP_191788.1| 2.00E-40
50 CATGAAGGGAATTG SPDL085d08_f phosphoenol pyruvate carboxylase Lotus corniculatus gb|AAD31452.1| 5.00E-34
50 CATGGATCGTATTG SPDL050b01_f dienelactone hydrolase family protein Arabidopsis thaliana ref|NP_566732.1| 7.00E-33
50 CATGTACTCGTACT no match        

Lotus japonicus
Kazusa DNA Research Institute
Department of Plant Gene Research