Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021549A_C01 KMC021549A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567420.1| Expressed protein; protein id: At4g14100.1, sup... 56 3e-07
gb|AAM64947.1| unknown [Arabidopsis thaliana] 56 3e-07
pir||B71402 hypothetical protein - Arabidopsis thaliana gi|22447... 56 3e-07
gb|AAO20053.1| unknown protein [Oryza sativa (japonica cultivar-... 52 3e-06
ref|NP_566739.1| expressed protein; protein id: At3g23760.1, sup... 52 3e-06
>ref|NP_567420.1| Expressed protein; protein id: At4g14100.1, supported by cDNA:
34967. [Arabidopsis thaliana]
Length = 206
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -3
Query: 521 AHVMTFEVGAVLEDAQWQAPVYCFNEAETHEKSSSSKALL 402
AH+MT+EVGAVLED +WQAPVYCFN+ +KS S+K L
Sbjct: 158 AHIMTYEVGAVLEDEKWQAPVYCFNK---EKKSLSTKGAL 194
>gb|AAM64947.1| unknown [Arabidopsis thaliana]
Length = 206
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -3
Query: 521 AHVMTFEVGAVLEDAQWQAPVYCFNEAETHEKSSSSKALL 402
AH+MT+EVGAVLED +WQAPVYCFN+ +KS S+K L
Sbjct: 158 AHIMTYEVGAVLEDEKWQAPVYCFNK---EKKSLSTKGAL 194
>pir||B71402 hypothetical protein - Arabidopsis thaliana
gi|2244765|emb|CAB10188.1| hypothetical protein
[Arabidopsis thaliana] gi|7268114|emb|CAB78451.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1047
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -3
Query: 521 AHVMTFEVGAVLEDAQWQAPVYCFNEAETHEKSSSSKALL 402
AH+MT+EVGAVLED +WQAPVYCFN+ +KS S+K L
Sbjct: 164 AHIMTYEVGAVLEDEKWQAPVYCFNK---EKKSLSTKGAL 200
>gb|AAO20053.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 214
Score = 52.4 bits (124), Expect = 3e-06
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = -3
Query: 521 AHVMTFEVGAVLEDAQWQAPVYCFNEAETHEKSSSSKALLDSEASAALGGSFMR 360
+HVM+FE GAVLEDA+WQAP YCF + + E +S+ AL+ + G F R
Sbjct: 159 SHVMSFEEGAVLEDAEWQAPEYCFGKGDETE-TSNDNALISEPVAGHDKGFFPR 211
>ref|NP_566739.1| expressed protein; protein id: At3g23760.1, supported by cDNA:
5176. [Arabidopsis thaliana] gi|21593856|gb|AAM65823.1|
unknown [Arabidopsis thaliana]
Length = 194
Score = 52.4 bits (124), Expect = 3e-06
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -3
Query: 521 AHVMTFEVGAVLEDAQWQAPVYCFN 447
AHVMTFEVGAVLED +WQAPVYCF+
Sbjct: 163 AHVMTFEVGAVLEDEKWQAPVYCFH 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,825,655
Number of Sequences: 1393205
Number of extensions: 8719281
Number of successful extensions: 26701
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26614
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
