Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021548A_C01 KMC021548A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86457 hypothetical protein F10C21.5 - Arabidopsis thaliana... 112 2e-24
ref|NP_564423.1| ATP-dependent Clp protease ATP-binding subunit ... 112 2e-24
dbj|BAA98151.1| CLP protease regulatory subunit CLPX-like [Arabi... 78 5e-14
ref|NP_568714.1| ATP-dependent Clp protease ATP-binding subunit ... 78 5e-14
dbj|BAB90173.1| putative ATP-dependent Clp protease regulatory s... 66 3e-10
>pir||D86457 hypothetical protein F10C21.5 - Arabidopsis thaliana
gi|12322385|gb|AAG51217.1|AC051630_14 CLP protease
regulatory subunit CLPX, putative; 15869-19379
[Arabidopsis thaliana]
Length = 670
Score = 112 bits (280), Expect = 2e-24
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Frame = +2
Query: 113 RPISTHLNHFIVSGGAHRRRESLVGVQERYKWDRGGS----DDGSTHNTTRKIRAEANCP 280
R IS N + + G+ RR +QER+K ++GG DD T RK+RAE NCP
Sbjct: 18 RSISPVSNLYSLELGSCPRRR----IQERFKSEQGGGGGGGDDFPVPVTRRKLRAEPNCP 73
Query: 281 RCTKDMNLIFSNRHFPATSDSDCGSNSGSSGGGGGGEGGGYQAVNLCPSCNTAYYFRPNN 460
RC+K M+L+FSNR FP+++ +S SS G G+ +Q+VN CP+C TAY F P
Sbjct: 74 RCSKQMDLLFSNRQFPSSNLLQRPDDSDSS---GAGDKTNFQSVNFCPTCKTAYGFNPRG 130
Query: 461 TTPLQGTFVEIGRVST 508
+PLQGTF+EIGRV +
Sbjct: 131 VSPLQGTFIEIGRVQS 146
>ref|NP_564423.1| ATP-dependent Clp protease ATP-binding subunit ClpX, putative;
protein id: At1g33360.1 [Arabidopsis thaliana]
gi|12322572|gb|AAG51286.1|AC027035_9 CLP protease
regulatory subunit CLPX, putative [Arabidopsis thaliana]
Length = 650
Score = 112 bits (280), Expect = 2e-24
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Frame = +2
Query: 113 RPISTHLNHFIVSGGAHRRRESLVGVQERYKWDRGGS----DDGSTHNTTRKIRAEANCP 280
R IS N + + G+ RR +QER+K ++GG DD T RK+RAE NCP
Sbjct: 18 RSISPVSNLYSLELGSCPRRR----IQERFKSEQGGGGGGGDDFPVPVTRRKLRAEPNCP 73
Query: 281 RCTKDMNLIFSNRHFPATSDSDCGSNSGSSGGGGGGEGGGYQAVNLCPSCNTAYYFRPNN 460
RC+K M+L+FSNR FP+++ +S SS G G+ +Q+VN CP+C TAY F P
Sbjct: 74 RCSKQMDLLFSNRQFPSSNLLQRPDDSDSS---GAGDKTNFQSVNFCPTCKTAYGFNPRG 130
Query: 461 TTPLQGTFVEIGRVST 508
+PLQGTF+EIGRV +
Sbjct: 131 VSPLQGTFIEIGRVQS 146
>dbj|BAA98151.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana]
Length = 608
Score = 78.2 bits (191), Expect = 5e-14
Identities = 41/96 (42%), Positives = 53/96 (54%)
Frame = +2
Query: 215 GGSDDGSTHNTTRKIRAEANCPRCTKDMNLIFSNRHFPATSDSDCGSNSGSSGGGGGGEG 394
GG D H IR++ NCPRC+ M++IFSNR T+ E
Sbjct: 68 GGGGDDYDH-----IRSDVNCPRCSAQMHVIFSNRPLSLTAR----------------EP 106
Query: 395 GGYQAVNLCPSCNTAYYFRPNNTTPLQGTFVEIGRV 502
G YQAVN C C TA+YFRP +PLQG+F+E+G+V
Sbjct: 107 GIYQAVNFCSQCKTAFYFRPFKLSPLQGSFIELGKV 142
>ref|NP_568714.1| ATP-dependent Clp protease ATP-binding subunit ClpX, putative;
protein id: At5g49840.1 [Arabidopsis thaliana]
Length = 606
Score = 78.2 bits (191), Expect = 5e-14
Identities = 41/96 (42%), Positives = 53/96 (54%)
Frame = +2
Query: 215 GGSDDGSTHNTTRKIRAEANCPRCTKDMNLIFSNRHFPATSDSDCGSNSGSSGGGGGGEG 394
GG D H IR++ NCPRC+ M++IFSNR T+ E
Sbjct: 68 GGGGDDYDH-----IRSDVNCPRCSAQMHVIFSNRPLSLTAR----------------EP 106
Query: 395 GGYQAVNLCPSCNTAYYFRPNNTTPLQGTFVEIGRV 502
G YQAVN C C TA+YFRP +PLQG+F+E+G+V
Sbjct: 107 GIYQAVNFCSQCKTAFYFRPFKLSPLQGSFIELGKV 142
>dbj|BAB90173.1| putative ATP-dependent Clp protease regulatory subunit CLPX [Oryza
sativa (japonica cultivar-group)]
gi|21328048|dbj|BAC00633.1| putative ATP-dependent Clp
protease regulatory subunit CLPX [Oryza sativa (japonica
cultivar-group)]
Length = 625
Score = 65.9 bits (159), Expect = 3e-10
Identities = 32/83 (38%), Positives = 49/83 (58%), Gaps = 3/83 (3%)
Frame = +2
Query: 254 KIRAEANCPRCTKDMNLIFSNRHFPATSDSDCGSNSGSSGGGGGGEGGG---YQAVNLCP 424
+IRAEANCPRC M++ FS + P + ++ GGGGG+G + ++CP
Sbjct: 31 RIRAEANCPRCAAHMSVQFSLQPLPTPPPA-------AAAGGGGGDGSQSHHHDGASVCP 83
Query: 425 SCNTAYYFRPNNTTPLQGTFVEI 493
+C+ A+ FR + PL+G F+EI
Sbjct: 84 ACSAAFLFRAHRIEPLRGAFLEI 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,445,934
Number of Sequences: 1393205
Number of extensions: 13802883
Number of successful extensions: 242211
Number of sequences better than 10.0: 1511
Number of HSP's better than 10.0 without gapping: 77678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177742
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
