Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021258A_C01 KMC021258A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177657.2| cytosolic IMP-GMP specific 5'-nucleotidase, put... 106 5e-23
pir||D96782 hypothetical protein F22H5.7 [imported] - Arabidopsi... 106 5e-23
ref|NP_199707.2| putative protein; protein id: At5g48960.1, supp... 42 0.004
gb|AAL32602.1| Unknown protein [Arabidopsis thaliana] 42 0.004
ref|NP_508492.1| 5'-nucleotidase cytosolic II (64.3 kD) [Caenorh... 40 0.016
>ref|NP_177657.2| cytosolic IMP-GMP specific 5'-nucleotidase, putative; protein id:
At1g75210.1, supported by cDNA: gi_20260153 [Arabidopsis
thaliana] gi|20260154|gb|AAM12975.1| cytosolic IMP-GMP
specific 5-nucleotidase, putative [Arabidopsis thaliana]
gi|28059263|gb|AAO30041.1| cytosolic IMP-GMP specific
5-nucleotidase, putative [Arabidopsis thaliana]
Length = 642
Score = 106 bits (264), Expect(2) = 5e-23
Identities = 49/54 (90%), Positives = 51/54 (93%)
Frame = -3
Query: 559 GQLMKTGYQNSRFAHQVERFACLYTSQVSNLALYSPDKYYRPSEDFMQHEFGIL 398
GQLMKTGYQ+SRFAHQVERFACLYTSQVSNL LYSPDKYYRPSEDFM HEF +L
Sbjct: 587 GQLMKTGYQSSRFAHQVERFACLYTSQVSNLRLYSPDKYYRPSEDFMSHEFHLL 640
Score = 23.1 bits (48), Expect(2) = 5e-23
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 584 HQKFHEPWG 558
HQKFH+ WG
Sbjct: 579 HQKFHKVWG 587
>pir||D96782 hypothetical protein F22H5.7 [imported] - Arabidopsis thaliana
gi|10092279|gb|AAG12692.1|AC025814_16 cytosolic IMP-GMP
specific 5'-nucleotidase, putative; 41097-37373
[Arabidopsis thaliana]
Length = 510
Score = 106 bits (264), Expect(2) = 5e-23
Identities = 49/54 (90%), Positives = 51/54 (93%)
Frame = -3
Query: 559 GQLMKTGYQNSRFAHQVERFACLYTSQVSNLALYSPDKYYRPSEDFMQHEFGIL 398
GQLMKTGYQ+SRFAHQVERFACLYTSQVSNL LYSPDKYYRPSEDFM HEF +L
Sbjct: 455 GQLMKTGYQSSRFAHQVERFACLYTSQVSNLRLYSPDKYYRPSEDFMSHEFHLL 508
Score = 23.1 bits (48), Expect(2) = 5e-23
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 584 HQKFHEPWG 558
HQKFH+ WG
Sbjct: 447 HQKFHKVWG 455
>ref|NP_199707.2| putative protein; protein id: At5g48960.1, supported by cDNA:
gi_17064895 [Arabidopsis thaliana]
Length = 642
Score = 42.4 bits (98), Expect = 0.004
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = -3
Query: 574 FTSHGGQLMKTG-YQNSRFAHQVERFACLYTSQVSNLALYSPDKYYRPSEDFMQHE 410
F G L + G + S Q+E++A +YTS+VSN Y+P Y+R E + H+
Sbjct: 577 FNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLNYTPFMYFRSQEQSLAHD 632
>gb|AAL32602.1| Unknown protein [Arabidopsis thaliana]
Length = 642
Score = 42.4 bits (98), Expect = 0.004
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = -3
Query: 574 FTSHGGQLMKTG-YQNSRFAHQVERFACLYTSQVSNLALYSPDKYYRPSEDFMQHE 410
F G L + G + S Q+E++A +YTS+VSN Y+P Y+R E + H+
Sbjct: 577 FNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLNYTPFMYFRSQEQSLAHD 632
>ref|NP_508492.1| 5'-nucleotidase cytosolic II (64.3 kD) [Caenorhabditis elegans]
gi|15487625|gb|AAC68740.2| Hypothetical protein
Y71H10B.1a [Caenorhabditis elegans]
Length = 556
Score = 40.4 bits (93), Expect = 0.016
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 559 GQLMKTGYQNSRFAHQVERFACLYTSQVSNLALYSPDKYYRPSEDFMQHEFGI 401
G L +TG + + FA QVER+A +Y S NL Y Y+R M HE +
Sbjct: 407 GSLFRTGGRTTFFASQVERYADVYASSCYNLVHYPSFYYFRAPMKCMPHELTV 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,207,809
Number of Sequences: 1393205
Number of extensions: 10282064
Number of successful extensions: 37148
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37143
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
