Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021084A_C01 KMC021084A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567896.1| putative protein; protein id: At4g32551.1, supp... 164 1e-46
gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana] 164 1e-46
pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana... 164 1e-46
ref|NP_565749.1| expressed protein; protein id: At2g32700.1, sup... 120 4e-31
dbj|BAB84838.1| putative flower development regulator LEUNI prot... 110 2e-23
>ref|NP_567896.1| putative protein; protein id: At4g32551.1, supported by cDNA:
gi_11141604 [Arabidopsis thaliana]
Length = 931
Score = 164 bits (414), Expect(2) = 1e-46
Identities = 72/87 (82%), Positives = 81/87 (92%)
Frame = -1
Query: 568 IDSVCWDPSGELLASVSEDSVRVWNLGTGSDGECVHELSCNGSKFHSCVFHPTYPSLLVI 389
I+SVCWDPSG+ LASVSED V+VW LGTGS+GECVHELSCNG+KF SCVFHP YPSLLVI
Sbjct: 821 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 880
Query: 388 GCYQSMELWNIAENKTMTLSAHDGLIT 308
GCYQS+ELWN++ENKTMTL AH+GLIT
Sbjct: 881 GCYQSLELWNMSENKTMTLPAHEGLIT 907
Score = 44.7 bits (104), Expect(2) = 1e-46
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -3
Query: 308 TALAVSTVNGLVASASHDKFIKLWK 234
T+LAVST GLVASASHDK +KLWK
Sbjct: 907 TSLAVSTATGLVASASHDKLVKLWK 931
>gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana]
Length = 931
Score = 164 bits (414), Expect(2) = 1e-46
Identities = 72/87 (82%), Positives = 81/87 (92%)
Frame = -1
Query: 568 IDSVCWDPSGELLASVSEDSVRVWNLGTGSDGECVHELSCNGSKFHSCVFHPTYPSLLVI 389
I+SVCWDPSG+ LASVSED V+VW LGTGS+GECVHELSCNG+KF SCVFHP YPSLLVI
Sbjct: 821 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 880
Query: 388 GCYQSMELWNIAENKTMTLSAHDGLIT 308
GCYQS+ELWN++ENKTMTL AH+GLIT
Sbjct: 881 GCYQSLELWNMSENKTMTLPAHEGLIT 907
Score = 44.7 bits (104), Expect(2) = 1e-46
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -3
Query: 308 TALAVSTVNGLVASASHDKFIKLWK 234
T+LAVST GLVASASHDK +KLWK
Sbjct: 907 TSLAVSTATGLVASASHDKLVKLWK 931
>pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana
gi|4914452|emb|CAB43692.1| putative protein [Arabidopsis
thaliana] gi|7270159|emb|CAB79972.1| putative protein
[Arabidopsis thaliana]
Length = 930
Score = 164 bits (414), Expect(2) = 1e-46
Identities = 72/87 (82%), Positives = 81/87 (92%)
Frame = -1
Query: 568 IDSVCWDPSGELLASVSEDSVRVWNLGTGSDGECVHELSCNGSKFHSCVFHPTYPSLLVI 389
I+SVCWDPSG+ LASVSED V+VW LGTGS+GECVHELSCNG+KF SCVFHP YPSLLVI
Sbjct: 820 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 879
Query: 388 GCYQSMELWNIAENKTMTLSAHDGLIT 308
GCYQS+ELWN++ENKTMTL AH+GLIT
Sbjct: 880 GCYQSLELWNMSENKTMTLPAHEGLIT 906
Score = 44.7 bits (104), Expect(2) = 1e-46
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -3
Query: 308 TALAVSTVNGLVASASHDKFIKLWK 234
T+LAVST GLVASASHDK +KLWK
Sbjct: 906 TSLAVSTATGLVASASHDKLVKLWK 930
>ref|NP_565749.1| expressed protein; protein id: At2g32700.1, supported by cDNA:
gi_13605814 [Arabidopsis thaliana]
gi|7486097|pir||T00798 hypothetical protein At2g32700
[imported] - Arabidopsis thaliana
gi|2914703|gb|AAC04493.1| expressed protein [Arabidopsis
thaliana] gi|13605815|gb|AAK32893.1|AF367306_1
At2g32700/F24L7.16 [Arabidopsis thaliana]
gi|25090107|gb|AAN72230.1| At2g32700/F24L7.16
[Arabidopsis thaliana]
Length = 787
Score = 120 bits (300), Expect(2) = 4e-31
Identities = 53/87 (60%), Positives = 72/87 (81%)
Frame = -1
Query: 568 IDSVCWDPSGELLASVSEDSVRVWNLGTGSDGECVHELSCNGSKFHSCVFHPTYPSLLVI 389
+ SVCW P+GEL+ASVSED+V++W+L S G+C+HELS +G+KFHS VFHP+YP LLVI
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSL---SSGDCIHELSNSGNKFHSVVFHPSYPDLLVI 736
Query: 388 GCYQSMELWNIAENKTMTLSAHDGLIT 308
G YQ++ELWN ENK MT++ H+ +I+
Sbjct: 737 GGYQAIELWNTMENKCMTVAGHECVIS 763
Score = 36.2 bits (82), Expect(2) = 4e-31
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -3
Query: 308 TALAVSTVNGLVASASHDKFIKLWK 234
+ALA S G+VASASHDK +K+WK
Sbjct: 763 SALAQSPSTGVVASASHDKSVKIWK 787
>dbj|BAB84838.1| putative flower development regulator LEUNI protein [Oryza sativa
(japonica cultivar-group)] gi|20804798|dbj|BAB92482.1|
putative flower development regulator, LEUNI protein
[Oryza sativa (japonica cultivar-group)]
Length = 883
Score = 110 bits (274), Expect = 2e-23
Identities = 53/87 (60%), Positives = 66/87 (74%), Gaps = 1/87 (1%)
Frame = -1
Query: 568 IDSVCWDPSGELLASVSEDSVRVWNLGTGSDGECVHELSCNGSKFHSCVFHPTYPSLLVI 389
I S+CWD +G+ LASVSEDSVR+W+ G DGE V+ELSC+G+KF SCVFHP+YP LL
Sbjct: 779 IHSLCWDSTGDNLASVSEDSVRIWSFAPGHDGEFVNELSCSGNKFQSCVFHPSYPYLL-- 836
Query: 388 GCYQSMELWNIAENKTMTL-SAHDGLI 311
S+ELW+I E MT+ SAHDGL+
Sbjct: 837 ----SLELWDIREKNAMTVHSAHDGLV 859
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,475,156
Number of Sequences: 1393205
Number of extensions: 10492082
Number of successful extensions: 32897
Number of sequences better than 10.0: 309
Number of HSP's better than 10.0 without gapping: 30453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32716
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
