Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020905A_C01 KMC020905A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187782.1| unknown protein; protein id: At3g11760.1 [Arabi... 47 2e-04
ref|NP_196106.1| unknown protein; protein id: At5g04860.1 [Arabi... 42 0.006
ref|NP_178850.1| unknown protein; protein id: At2g10560.1 [Arabi... 35 0.69
ref|NP_212508.1| B. burgdorferi predicted coding region BB0374 [... 34 1.2
ref|NP_197251.1| RGA-like protein; protein id: At5g17490.1 [Arab... 31 9.9
>ref|NP_187782.1| unknown protein; protein id: At3g11760.1 [Arabidopsis thaliana]
gi|6671932|gb|AAF23192.1|AC016795_5 unknown protein
[Arabidopsis thaliana]
Length = 702
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/32 (71%), Positives = 25/32 (77%)
Frame = -3
Query: 520 PIRELQADVKKVLVLMSSTQVHHRLQIEFHYT 425
PIRELQ D+KK L S+ VHHRLQIEFHYT
Sbjct: 665 PIRELQEDIKKGLA--STAPVHHRLQIEFHYT 694
>ref|NP_196106.1| unknown protein; protein id: At5g04860.1 [Arabidopsis thaliana]
gi|9758461|dbj|BAB08990.1| gene_id:MUK11.18~unknown
protein [Arabidopsis thaliana]
Length = 782
Score = 41.6 bits (96), Expect = 0.006
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Frame = -3
Query: 520 PIRELQADVKKVLVLMSSTQVHHRLQIEFHYTQLLQ----SCPATPAVELEASIAATPET 353
PI++++AD+KK LV + +HHRLQIE HYT+ L + + A E+ S AA T
Sbjct: 700 PIQQVKADMKKGLV----SSLHHRLQIELHYTKHLHHHQPNMFESSATEVTVSEAAVSVT 755
Query: 352 LALAI 338
+A ++
Sbjct: 756 VAWSL 760
>ref|NP_178850.1| unknown protein; protein id: At2g10560.1 [Arabidopsis thaliana]
gi|25411361|pir||D84492 hypothetical protein At2g10560
[imported] - Arabidopsis thaliana
gi|4733993|gb|AAD28672.1| unknown protein [Arabidopsis
thaliana]
Length = 278
Score = 34.7 bits (78), Expect = 0.69
Identities = 17/35 (48%), Positives = 26/35 (73%)
Frame = -3
Query: 520 PIRELQADVKKVLVLMSSTQVHHRLQIEFHYTQLL 416
PI++++AD+K+ LV + HHRLQIE +YT+ L
Sbjct: 196 PIQQVKADMKEGLV----SSFHHRLQIELYYTKHL 226
>ref|NP_212508.1| B. burgdorferi predicted coding region BB0374 [Borrelia
burgdorferi] gi|3915362|sp|O50161|Y374_BORBU
Hypothetical protein BB0374 gi|7463303|pir||E70146
hypothetical protein BB0374 - Lyme disease spirochete
gi|2688290|gb|AAC66766.1| B. burgdorferi predicted
coding region BB0374 [Borrelia burgdorferi B31]
Length = 379
Score = 33.9 bits (76), Expect = 1.2
Identities = 18/52 (34%), Positives = 32/52 (60%), Gaps = 3/52 (5%)
Frame = +3
Query: 3 VKKVYKKLHSPFHEQNLS--HNYMSNAKSLHSLCKGKLQNHLQDI-PFPRKI 149
VKK Y+++H F+E+ +S H +SN + ++ CK + + QDI P +K+
Sbjct: 60 VKKEYEEIHKKFNEEAISSYHVIISNLEEIYENCKRNKKIYYQDIMPTVKKV 111
>ref|NP_197251.1| RGA-like protein; protein id: At5g17490.1 [Arabidopsis thaliana]
gi|11358768|pir||T51475 RGA-like protein - Arabidopsis
thaliana gi|9755773|emb|CAC01893.1| RGA-like protein
[Arabidopsis thaliana] gi|26449552|dbj|BAC41902.1|
RGA-like protein [Arabidopsis thaliana]
gi|29028922|gb|AAO64840.1| At5g17490 [Arabidopsis
thaliana]
Length = 523
Score = 30.8 bits (68), Expect = 9.9
Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = +1
Query: 73 MPKVCTHFAKENYRTIYRIYPSQERSKPSAT*PRHQKL*NELLFVKFTSKSLDKKIL--I 246
M KV T+FA+ R IYRI+PS PS + ++KF + ++ IL +
Sbjct: 194 MGKVATYFAEALARRIYRIHPSAAAIDPSFEEILQMNFYDSCPYLKFAHFTANQAILEAV 253
Query: 247 TNSK 258
T S+
Sbjct: 254 TTSR 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,192,719
Number of Sequences: 1393205
Number of extensions: 8011529
Number of successful extensions: 25118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25099
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
