Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020842A_C01 KMC020842A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima] 125 3e-28
gb|AAN76362.1| serpin-like protein [Citrus x paradisi] 119 2e-26
ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arab... 116 2e-25
ref|NP_180096.1| putative serpin; protein id: At2g25240.1 [Arabi... 96 4e-19
emb|CAB52709.1| serpin [Triticum aestivum] 93 2e-18
>gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima]
Length = 389
Score = 125 bits (315), Expect = 3e-28
Identities = 69/152 (45%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Frame = +1
Query: 124 MELEKSKSKSMDVALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDELLS 303
M+++++ DVA+ +TK + + +G N+V SP S+ LS++AAGSK R LD+LLS
Sbjct: 1 MDIKEAIRNHGDVAMAITKRILQHDEAKGSNVVISPLSIYVLLSLVAAGSKGRPLDQLLS 60
Query: 304 FLRFDSIDDLTTFFSQVIFPVLISDAAADADTDGSHHLCFANGIWADDSLSLSHRFKQLV 483
FL+ +SID+L F S +I V ADA + G L F NG+W D SLSL F+Q+V
Sbjct: 61 FLKSNSIDNLNAFASHIIDKVF-----ADASSCGGPRLAFVNGVWIDQSLSLKSSFQQVV 115
Query: 484 ATHYKATLTALDFQT--TEVHREVNSWIEKET 573
+YKA L +DF T EV EVNSW+EK T
Sbjct: 116 DKYYKAELRQVDFLTKANEVISEVNSWVEKNT 147
>gb|AAN76362.1| serpin-like protein [Citrus x paradisi]
Length = 389
Score = 119 bits (299), Expect = 2e-26
Identities = 71/151 (47%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Frame = +1
Query: 130 LEKSKSKSMDVALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDELLSFL 309
+ +S S DVAL LTKH+ + + + N+VFSP S+ LS+++AGSK TLD+LLSFL
Sbjct: 1 VRESISNQTDVALSLTKHV-ALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL 59
Query: 310 RFDSIDDLTTFFSQVIFPVLISDAAADADTDGSHHLCFANGIWADDSLSLSHRFKQLVAT 489
+ S D L TF S+++ V AD G L ANG+W D SLSL + FKQ+V
Sbjct: 60 KSKSDDQLNTFASELVAVVF-----ADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDN 114
Query: 490 HYKATLTALDFQT--TEVHREVNSWIEKETD 576
YKA +D QT EV REVN W EKET+
Sbjct: 115 VYKAASNQVDSQTKAAEVSREVNMWAEKETN 145
>ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arabidopsis thaliana]
gi|25405891|pir||H96517 protein T2E6.22 [imported] -
Arabidopsis thaliana gi|5668792|gb|AAD46018.1|AC007519_3
Strong similarity to gb|Z15116 serpin (pazx) from
Hordeum vulgare and is a member of the PF|00079 Serpin
family. ESTs gb|R65473, gb|N38150 and gb|AA712968 come
from this gene. [Arabidopsis thaliana]
gi|9802595|gb|AAF99797.1|AC012463_14 T2E6.22
[Arabidopsis thaliana] gi|27311755|gb|AAO00843.1|
serpin, putative [Arabidopsis thaliana]
Length = 391
Score = 116 bits (291), Expect = 2e-25
Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 124 MELEKSKSKSMDVALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDELLS 303
M++ +S S V++ L KH+ + Q N++FSP S+ LS++AAGS T D++LS
Sbjct: 1 MDVRESISLQNQVSMNLAKHVITTVS-QNSNVIFSPASINVVLSIIAAGSAGATKDQILS 59
Query: 304 FLRFDSIDDLTTFFSQVIFPVLISDAAADADTDGSHHLCFANGIWADDSLSLSHRFKQLV 483
FL+F S D L +F S+++ VL AD +G L ANG W D SLS FKQL+
Sbjct: 60 FLKFSSTDQLNSFSSEIVSAVL-----ADGSANGGPKLSVANGAWIDKSLSFKPSFKQLL 114
Query: 484 ATHYKATLTALDFQT--TEVHREVNSWIEKETD 576
YKA DFQ+ EV EVNSW EKET+
Sbjct: 115 EDSYKAASNQADFQSKAVEVIAEVNSWAEKETN 147
>ref|NP_180096.1| putative serpin; protein id: At2g25240.1 [Arabidopsis thaliana]
gi|25310862|pir||A84646 probable serpin [imported] -
Arabidopsis thaliana gi|4567253|gb|AAD23667.1| putative
serpin [Arabidopsis thaliana]
Length = 385
Score = 95.5 bits (236), Expect = 4e-19
Identities = 62/154 (40%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 MELEKSKSKSMDVALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDELLS 303
MEL KS DV + LTKH+ + G N+VFSP S+ LS++AAGS T +++LS
Sbjct: 1 MELGKSIENHNDVVVRLTKHVIATVA-NGSNLVFSPISINVLLSLIAAGSCSVTKEQILS 59
Query: 304 FLRFDSIDDLTTFFSQVIFPVLISDAAADADTDGSH-HLCFANGIWADDSLSLSHRFKQL 480
FL S D L +Q+I D T+ S L ANG+W D SL FK L
Sbjct: 60 FLMLPSTDHLNLVLAQII----------DGGTEKSDLRLSIANGVWIDKFFSLKLSFKDL 109
Query: 481 VATHYKATLTALDF--QTTEVHREVNSWIEKETD 576
+ YKAT + +DF + +EV EVN+W E T+
Sbjct: 110 LENSYKATCSQVDFASKPSEVIDEVNTWAEVHTN 143
>emb|CAB52709.1| serpin [Triticum aestivum]
Length = 398
Score = 93.2 bits (230), Expect = 2e-18
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Frame = +1
Query: 163 ALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDELLSFLRFDSIDDLTTF 342
AL L + S N VFSP SL ALS++AAG+ T D+L++ L ++ L
Sbjct: 20 ALRLASTISSNPKSAASNAVFSPVSLHVALSLLAAGAGSATRDQLVATLGTGEVEGLHAL 79
Query: 343 FSQVIFPVLISDAAADADTDGSHHLCFANGIWADDSLSLSHRFKQLVATHYKATLTALDF 522
QV+ VL ADA + G H+ FANG++ D SL L F++L YKA ++DF
Sbjct: 80 AEQVVQFVL-----ADASSAGGPHVAFANGVFVDASLPLKPSFQELAVCKYKADTQSVDF 134
Query: 523 QT--TEVHREVNSWIEKET 573
QT EV +VNSW+EK T
Sbjct: 135 QTKAAEVATQVNSWVEKVT 153
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,635,151
Number of Sequences: 1393205
Number of extensions: 10535744
Number of successful extensions: 39472
Number of sequences better than 10.0: 425
Number of HSP's better than 10.0 without gapping: 36808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39115
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
