Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020818A_C01 KMC020818A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO39852.1| unknown protein [Oryza sativa (japonica cultivar-... 77 2e-13
ref|NP_566559.1| expressed protein; protein id: At3g16810.1, sup... 61 8e-09
ref|NP_667311.1| olfactory receptor MOR20-1 [Mus musculus] gi|18... 32 5.0
ref|XP_145795.1| similar to olfactory receptor MOR20-1 [Mus musc... 32 5.0
gb|EAA39448.1| GLP_762_36827_38209 [Giardia lamblia ATCC 50803] 32 6.6
>gb|AAO39852.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 659
Score = 76.6 bits (187), Expect = 2e-13
Identities = 34/49 (69%), Positives = 44/49 (89%)
Frame = -3
Query: 546 EEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLIDNGILK 400
++AL+GKC++WA GHS KV++AFLESPDS+V+ LAK ELQPL+D GILK
Sbjct: 602 KKALEGKCKTWADGHSSKVVAAFLESPDSKVRDLAKAELQPLVDRGILK 650
>ref|NP_566559.1| expressed protein; protein id: At3g16810.1, supported by cDNA:
gi_15010673 [Arabidopsis thaliana]
gi|7939573|dbj|BAA95774.1| gene_id:K20I9.3~similar to
unknown protein~sp|Q15397 [Arabidopsis thaliana]
gi|15010674|gb|AAK73996.1| AT3g16810/K20I9_3
[Arabidopsis thaliana]
Length = 641
Score = 61.2 bits (147), Expect = 8e-09
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = -3
Query: 546 EEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLIDNGILK 400
++AL GKC SWA GH K++SAF+E+ D +V+++AK ELQ L++ G LK
Sbjct: 585 KKALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLK 633
>ref|NP_667311.1| olfactory receptor MOR20-1 [Mus musculus]
gi|18479270|gb|AAL60649.1| olfactory receptor MOR20-1
[Mus musculus]
Length = 317
Score = 32.0 bits (71), Expect = 5.0
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Frame = -3
Query: 162 FLLIFP-CGSFAITISECYRPIIP*IFCGLLVFSCLI*FFELLCTILYTLIII 7
FL FP CG+ ++ S CY P + + CG + FS + +LCT +I I
Sbjct: 163 FLRTFPFCGANILSHSYCYYPDMLNLACGDVTFSSVYGLVCVLCTFAVDVIFI 215
>ref|XP_145795.1| similar to olfactory receptor MOR20-1 [Mus musculus]
Length = 317
Score = 32.0 bits (71), Expect = 5.0
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Frame = -3
Query: 162 FLLIFP-CGSFAITISECYRPIIP*IFCGLLVFSCLI*FFELLCTILYTLIII 7
FL FP CG+ ++ S CY P + + CG + FS + +LCT +I I
Sbjct: 163 FLRTFPFCGANILSHSYCYYPDMLNLACGDVTFSSVYGLVCVLCTFAVDVIFI 215
>gb|EAA39448.1| GLP_762_36827_38209 [Giardia lamblia ATCC 50803]
Length = 460
Score = 31.6 bits (70), Expect = 6.6
Identities = 11/27 (40%), Positives = 20/27 (73%)
Frame = -2
Query: 385 GTSNPIISLHGEKNYNSIGQCRRTTSV 305
GT +PI++LH + +N +G+ +R T+V
Sbjct: 112 GTESPILALHNQTGWNDVGEKQRITAV 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,132,567
Number of Sequences: 1393205
Number of extensions: 8437905
Number of successful extensions: 19193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19193
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
