Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020531A_C01 KMC020531A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181685.1| glycerol-3-phosphate dehydrogenase; protein id:... 247 6e-65
dbj|BAB90253.1| putative glycerol-3-phosphate dehydrogenase [Ory... 244 5e-64
ref|NP_187426.1| putative glycerol-3-phosphate dehydrogenase; pr... 229 2e-59
dbj|BAB86423.1| putative glycerol-3-phosphate dehydrogenase [Ory... 224 6e-58
ref|NP_192951.1| putative protein; protein id: At4g12140.1 [Arab... 35 0.48
>ref|NP_181685.1| glycerol-3-phosphate dehydrogenase; protein id: At2g41540.1,
supported by cDNA: 105456., supported by cDNA:
gi_17380927, supported by cDNA: gi_20258940 [Arabidopsis
thaliana] gi|7487604|pir||T00810 glycerol-3-phosphate
dehydrogenase [imported] - Arabidopsis thaliana
gi|2618689|gb|AAB84336.1| glycerol-3-phosphate
dehydrogenase [Arabidopsis thaliana]
gi|15554517|emb|CAC69665.1| glycerol-3-phosphate
dehydrogenase [Arabidopsis thaliana]
gi|17380928|gb|AAL36276.1| putative glycerol-3-phosphate
dehydrogenase [Arabidopsis thaliana]
gi|20258941|gb|AAM14186.1| putative glycerol-3-phosphate
dehydrogenase [Arabidopsis thaliana]
Length = 462
Score = 247 bits (631), Expect = 6e-65
Identities = 124/146 (84%), Positives = 136/146 (92%)
Frame = -3
Query: 555 MIFITHLLTKEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGTLSPAMGDSISGKGMIQG 376
MIFITHLL +EPEKLAGPLLADTYVTLLKGRNAWYGQMLAKG ++ MGDSISGKGMIQG
Sbjct: 317 MIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSISGKGMIQG 376
Query: 375 VSAVEAFFELLSQSSLNVLHPDENKPVAPVELCPILKTLYKILISREQSSQAILKALRDE 196
VSAV AF++LLSQSSL++L +E KPVAPVE CPILKTLYKILI+REQS+QAIL+ALRDE
Sbjct: 377 VSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQAILQALRDE 436
Query: 195 NLNDPRERIEIAQSHAFYRPSLLGQP 118
LNDPR+RIEIAQSHAFYRPSLLGQP
Sbjct: 437 TLNDPRDRIEIAQSHAFYRPSLLGQP 462
>dbj|BAB90253.1| putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 456
Score = 244 bits (623), Expect = 5e-64
Identities = 121/146 (82%), Positives = 133/146 (90%)
Frame = -3
Query: 555 MIFITHLLTKEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGTLSPAMGDSISGKGMIQG 376
MIFITHLLT++PEKLAGPLLADTYVTLLKGRNAWYGQMLAKG LSP MGDSI GKGMIQG
Sbjct: 311 MIFITHLLTEQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQG 370
Query: 375 VSAVEAFFELLSQSSLNVLHPDENKPVAPVELCPILKTLYKILISREQSSQAILKALRDE 196
+SAV AFFELLSQ SL+V HP+ENK VAP ELCPILK LY+ILI RE S++ IL+ALRDE
Sbjct: 371 ISAVGAFFELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRDILQALRDE 430
Query: 195 NLNDPRERIEIAQSHAFYRPSLLGQP 118
+NDPRERIE+AQSHAFYRPSLLG+P
Sbjct: 431 TMNDPRERIEMAQSHAFYRPSLLGKP 456
>ref|NP_187426.1| putative glycerol-3-phosphate dehydrogenase; protein id:
At3g07690.1 [Arabidopsis thaliana]
gi|6466952|gb|AAF13087.1|AC009176_14 unknown protein
[Arabidopsis thaliana]
gi|6648181|gb|AAF21179.1|AC013483_3 putative
glycerol-3-phosphate dehydrogenase [Arabidopsis
thaliana]
Length = 455
Score = 229 bits (584), Expect = 2e-59
Identities = 115/145 (79%), Positives = 127/145 (87%)
Frame = -3
Query: 555 MIFITHLLTKEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGTLSPAMGDSISGKGMIQG 376
MIFITHLL KEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG LS MGDSI GKGMIQG
Sbjct: 309 MIFITHLLAKEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQG 368
Query: 375 VSAVEAFFELLSQSSLNVLHPDENKPVAPVELCPILKTLYKILISREQSSQAILKALRDE 196
VSAV+AFFELL+QSSL++ HP+E KPV P ELCPILK LY+ILI+RE S +AIL+ALRDE
Sbjct: 369 VSAVKAFFELLNQSSLSLQHPEEGKPVTPAELCPILKMLYRILITREFSCEAILEALRDE 428
Query: 195 NLNDPRERIEIAQSHAFYRPSLLGQ 121
+NDPRE IEIA SH F++P LLGQ
Sbjct: 429 TMNDPRELIEIAHSHLFFQPWLLGQ 453
>dbj|BAB86423.1| putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 467
Score = 224 bits (571), Expect = 6e-58
Identities = 110/146 (75%), Positives = 125/146 (85%)
Frame = -3
Query: 555 MIFITHLLTKEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGTLSPAMGDSISGKGMIQG 376
MI+ITHLL +EPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG L+ MGDSI GKG IQG
Sbjct: 316 MIYITHLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQG 375
Query: 375 VSAVEAFFELLSQSSLNVLHPDENKPVAPVELCPILKTLYKILISREQSSQAILKALRDE 196
VSAV AF+ELLSQ SL+V+HP+ N+ VAPVE+CPILK LYKILI RE +IL+A+RDE
Sbjct: 376 VSAVNAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDE 435
Query: 195 NLNDPRERIEIAQSHAFYRPSLLGQP 118
+ DPRERIE+AQ H+ YRPSLLGQP
Sbjct: 436 TMYDPRERIEMAQGHSLYRPSLLGQP 461
>ref|NP_192951.1| putative protein; protein id: At4g12140.1 [Arabidopsis thaliana]
gi|7485576|pir||T06621 hypothetical protein F16J13.210 -
Arabidopsis thaliana gi|4586119|emb|CAB40955.1| putative
protein [Arabidopsis thaliana]
gi|7267915|emb|CAB78257.1| putative protein [Arabidopsis
thaliana]
Length = 202
Score = 35.4 bits (80), Expect = 0.48
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 182 GSFRFSSLKAFRMACDDCSLDINIL*SVFKIGQSSTGATGLFSSGCNTFRLDWLK 346
GS + LK+F M D CS+ + L S K G + + +F S C ++WLK
Sbjct: 136 GSMKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSC---LVEWLK 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,037,003
Number of Sequences: 1393205
Number of extensions: 9535874
Number of successful extensions: 22969
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22958
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
