Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020483A_C01 KMC020483A_c01
(771 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana] 390 e-107
ref|NP_564824.1| expressed protein; protein id: At1g64110.1, sup... 390 e-107
pir||G96665 protein F22C12.12 [imported] - Arabidopsis thaliana ... 390 e-107
gb|AAN46221.1| unknown protein [Arabidopsis lyrata] gi|28188593|... 387 e-106
gb|AAN46211.1| unknown protein [Arabidopsis thaliana] 387 e-106
>gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana]
Length = 752
Score = 390 bits (1002), Expect = e-107
Identities = 205/257 (79%), Positives = 221/257 (85%), Gaps = 8/257 (3%)
Frame = -3
Query: 757 AKNDVRCDNQAPENKNXTEKAIPVTKKD-------GENPTPAKAEV-PDNEFEKRIRPEV 602
+ +V+ ++ PE K TE V+ K+ E TP EV PDNEFEKRIRPEV
Sbjct: 453 SSKEVKAESIKPETK--TESVTTVSSKEEPEKEAKAEKVTPKAPEVAPDNEFEKRIRPEV 510
Query: 601 IPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTM 422
IPA EI VTF DIGA+DEIKESLQELVMLPLRRPDLF GGLLKPCRGILLFGPPGTGKTM
Sbjct: 511 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTM 570
Query: 421 LAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQR 242
LA AIA EAGASFINVSMSTITSKWFGEDEKNVRALF+LA+KV+PTIIFVDEVDSMLGQR
Sbjct: 571 LAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQR 630
Query: 241 TRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLP 62
TRVGEHEAMRKIKNEFM+HWDGL+T PGE+ILVLAATNRPFDLDEAIIRRFERRIMVGLP
Sbjct: 631 TRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 690
Query: 61 SVENREMILKTLLA*EK 11
+VENRE IL+TLLA EK
Sbjct: 691 AVENREKILRTLLAKEK 707
>ref|NP_564824.1| expressed protein; protein id: At1g64110.1, supported by cDNA:
gi_15810166 [Arabidopsis thaliana]
gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22
[Arabidopsis thaliana]
Length = 824
Score = 390 bits (1002), Expect = e-107
Identities = 205/257 (79%), Positives = 221/257 (85%), Gaps = 8/257 (3%)
Frame = -3
Query: 757 AKNDVRCDNQAPENKNXTEKAIPVTKKD-------GENPTPAKAEV-PDNEFEKRIRPEV 602
+ +V+ ++ PE K TE V+ K+ E TP EV PDNEFEKRIRPEV
Sbjct: 448 SSKEVKAESIKPETK--TESVTTVSSKEEPEKEAKAEKVTPKAPEVAPDNEFEKRIRPEV 505
Query: 601 IPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTM 422
IPA EI VTF DIGA+DEIKESLQELVMLPLRRPDLF GGLLKPCRGILLFGPPGTGKTM
Sbjct: 506 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTM 565
Query: 421 LAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQR 242
LA AIA EAGASFINVSMSTITSKWFGEDEKNVRALF+LA+KV+PTIIFVDEVDSMLGQR
Sbjct: 566 LAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQR 625
Query: 241 TRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLP 62
TRVGEHEAMRKIKNEFM+HWDGL+T PGE+ILVLAATNRPFDLDEAIIRRFERRIMVGLP
Sbjct: 626 TRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 685
Query: 61 SVENREMILKTLLA*EK 11
+VENRE IL+TLLA EK
Sbjct: 686 AVENREKILRTLLAKEK 702
>pir||G96665 protein F22C12.12 [imported] - Arabidopsis thaliana
gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12
[Arabidopsis thaliana]
Length = 825
Score = 390 bits (1002), Expect = e-107
Identities = 205/257 (79%), Positives = 221/257 (85%), Gaps = 8/257 (3%)
Frame = -3
Query: 757 AKNDVRCDNQAPENKNXTEKAIPVTKKD-------GENPTPAKAEV-PDNEFEKRIRPEV 602
+ +V+ ++ PE K TE V+ K+ E TP EV PDNEFEKRIRPEV
Sbjct: 426 SSKEVKAESIKPETK--TESVTTVSSKEEPEKEAKAEKVTPKAPEVAPDNEFEKRIRPEV 483
Query: 601 IPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTM 422
IPA EI VTF DIGA+DEIKESLQELVMLPLRRPDLF GGLLKPCRGILLFGPPGTGKTM
Sbjct: 484 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTM 543
Query: 421 LAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQR 242
LA AIA EAGASFINVSMSTITSKWFGEDEKNVRALF+LA+KV+PTIIFVDEVDSMLGQR
Sbjct: 544 LAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQR 603
Query: 241 TRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLP 62
TRVGEHEAMRKIKNEFM+HWDGL+T PGE+ILVLAATNRPFDLDEAIIRRFERRIMVGLP
Sbjct: 604 TRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 663
Query: 61 SVENREMILKTLLA*EK 11
+VENRE IL+TLLA EK
Sbjct: 664 AVENREKILRTLLAKEK 680
>gb|AAN46221.1| unknown protein [Arabidopsis lyrata] gi|28188593|gb|AAN46222.1|
unknown protein [Arabidopsis lyrata]
Length = 316
Score = 387 bits (993), Expect = e-106
Identities = 194/218 (88%), Positives = 207/218 (93%)
Frame = -3
Query: 655 AKAEVPDNEFEKRIRPEVIPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLL 476
+K PDNEFEKRIRPEVIPANEIGVTF DIG++DE KESLQELVMLPLRRPDLFKGGLL
Sbjct: 1 SKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 60
Query: 475 KPCRGILLFGPPGTGKTMLAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAK 296
KPCRGILLFGPPGTGKTM+A AIANEAGASFINVSMSTITSKWFGEDEKNVRALF+LAAK
Sbjct: 61 KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 120
Query: 295 VAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFD 116
V+PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL++ G++ILVLAATNRPFD
Sbjct: 121 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPFD 180
Query: 115 LDEAIIRRFERRIMVGLPSVENREMILKTLLA*EKHEN 2
LDEAIIRRFERRIMVGLPSVE+RE IL+TLL+ EK EN
Sbjct: 181 LDEAIIRRFERRIMVGLPSVESREKILRTLLSKEKTEN 218
>gb|AAN46211.1| unknown protein [Arabidopsis thaliana]
Length = 316
Score = 387 bits (993), Expect = e-106
Identities = 194/218 (88%), Positives = 207/218 (93%)
Frame = -3
Query: 655 AKAEVPDNEFEKRIRPEVIPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLL 476
+K PDNEFEKRIRPEVIPANEIGVTF DIG++DE KESLQELVMLPLRRPDLFKGGLL
Sbjct: 1 SKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 60
Query: 475 KPCRGILLFGPPGTGKTMLAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAK 296
KPCRGILLFGPPGTGKTM+A AIANEAGASFINVSMSTITSKWFGEDEKNVRALF+LAAK
Sbjct: 61 KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 120
Query: 295 VAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFD 116
V+PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL++ G++ILVLAATNRPFD
Sbjct: 121 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPFD 180
Query: 115 LDEAIIRRFERRIMVGLPSVENREMILKTLLA*EKHEN 2
LDEAIIRRFERRIMVGLPSVE+RE IL+TLL+ EK EN
Sbjct: 181 LDEAIIRRFERRIMVGLPSVESREKILRTLLSKEKTEN 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,977,079
Number of Sequences: 1393205
Number of extensions: 14843067
Number of successful extensions: 55156
Number of sequences better than 10.0: 2575
Number of HSP's better than 10.0 without gapping: 50137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53368
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
