Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020339A_C01 KMC020339A_c01
(765 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34771.1|AF227626_1 40S ribosomal protein S11 [Euphorbia es... 188 8e-47
ref|NP_197763.1| 40S ribosomal protein S11; protein id: At5g2374... 182 5e-45
sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 gi|454848|gb|AAC1... 182 5e-45
pir||D35542 ribosomal protein S11 - soybean (fragment) gi|170054... 182 5e-45
sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 gi|82722|pir||S16... 180 2e-44
>gb|AAF34771.1|AF227626_1 40S ribosomal protein S11 [Euphorbia esula]
Length = 159
Score = 188 bits (477), Expect = 8e-47
Identities = 89/95 (93%), Positives = 92/95 (96%)
Frame = -1
Query: 765 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 586
VS+RGRILAGTCHSAKM RTIIVRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKEGDHV
Sbjct: 65 VSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 124
Query: 585 IIGQCRPLSKTVRFNVLKVVPAGSSGAVKKAFTGI 481
IIGQCRPLSKTVRFNVLKV+PAGSSG VKKAFT I
Sbjct: 125 IIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159
>ref|NP_197763.1| 40S ribosomal protein S11; protein id: At5g23740.1, supported by
cDNA: 33187., supported by cDNA: gi_13430735, supported
by cDNA: gi_166868, supported by cDNA: gi_17065613
[Arabidopsis thaliana] gi|27735234|sp|P42733|R11C_ARATH
40S ribosomal protein S11-3 gi|10176841|dbj|BAB10047.1|
40S ribosomal protein S11 [Arabidopsis thaliana]
gi|13430736|gb|AAK25990.1|AF360280_1 putative 40S
ribosomal protein S11 [Arabidopsis thaliana]
gi|17065614|gb|AAL33787.1| putative 40S ribosomal
protein S11 [Arabidopsis thaliana]
gi|21592846|gb|AAM64796.1| 40S ribosomal protein S11
[Arabidopsis thaliana]
Length = 159
Score = 182 bits (462), Expect = 5e-45
Identities = 85/95 (89%), Positives = 91/95 (95%)
Frame = -1
Query: 765 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 586
VS+RGRILAGTCHSAKM RTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHV
Sbjct: 65 VSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 124
Query: 585 IIGQCRPLSKTVRFNVLKVVPAGSSGAVKKAFTGI 481
IIGQCRPLSKTVRFNVLKV+PAG+S KKAFTG+
Sbjct: 125 IIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159
>sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 gi|454848|gb|AAC14469.1| ribosomal
protein S11 [Glycine max]
Length = 159
Score = 182 bits (462), Expect = 5e-45
Identities = 87/95 (91%), Positives = 90/95 (94%)
Frame = -1
Query: 765 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 586
VS+RGRILAGTCHSAKM RTIIVRRNYLHFIKKYQRYEKRHSNIPAHISP FRVKEGDHV
Sbjct: 65 VSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHV 124
Query: 585 IIGQCRPLSKTVRFNVLKVVPAGSSGAVKKAFTGI 481
IIGQCRPLSKTVRFNVLKV+PAGSS KKAFTG+
Sbjct: 125 IIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159
>pir||D35542 ribosomal protein S11 - soybean (fragment) gi|170054|gb|AAA34006.1|
ribosomal protein S11
Length = 141
Score = 182 bits (462), Expect = 5e-45
Identities = 87/95 (91%), Positives = 90/95 (94%)
Frame = -1
Query: 765 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 586
VS+RGRILAGTCHSAKM RTIIVRRNYLHFIKKYQRYEKRHSNIPAHISP FRVKEGDHV
Sbjct: 47 VSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHV 106
Query: 585 IIGQCRPLSKTVRFNVLKVVPAGSSGAVKKAFTGI 481
IIGQCRPLSKTVRFNVLKV+PAGSS KKAFTG+
Sbjct: 107 IIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 141
>sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 gi|82722|pir||S16577 ribosomal protein
S11 - maize gi|22470|emb|CAA39438.1| ribosomal protein
S11 [Zea mays]
Length = 159
Score = 180 bits (456), Expect = 2e-44
Identities = 84/93 (90%), Positives = 90/93 (96%)
Frame = -1
Query: 765 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 586
VS+RGRI+AGTCHSAKM RTIIVRRNYLHF+KKYQRYEKRHSNIPAHISPCFRVKEGDHV
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHV 124
Query: 585 IIGQCRPLSKTVRFNVLKVVPAGSSGAVKKAFT 487
IIGQCRPLSKTVRFNV+KV+PAGS+ A KKAFT
Sbjct: 125 IIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,148,178
Number of Sequences: 1393205
Number of extensions: 13771153
Number of successful extensions: 32477
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 31223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32341
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
