Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020297A_C01 KMC020297A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_492556.1| Domain 1 (hsr-9Co) [Caenorhabditis elegans] gi|... 35 0.39
ref|NP_524678.2| scribbler CG5580-PA gi|7302641|gb|AAF57721.1| C... 35 0.51
dbj|BAB20792.1| master of thick veins [Drosophila melanogaster] 35 0.51
gb|AAM11146.1| LD21711p [Drosophila melanogaster] 35 0.51
gb|AAF70256.1|AF247562_1 Scribbler long isoform [Drosophila mela... 35 0.51
>ref|NP_492556.1| Domain 1 (hsr-9Co) [Caenorhabditis elegans] gi|7507218|pir||T24541
hypothetical protein T05F1.6a - Caenorhabditis elegans
gi|3924851|emb|CAB04695.1| C. elegans HSR-9 protein
(corresponding sequence T05F1.6a) [Caenorhabditis
elegans]
Length = 1151
Score = 35.4 bits (80), Expect = 0.39
Identities = 20/93 (21%), Positives = 44/93 (46%)
Frame = -2
Query: 508 KTVVECSPEPLQNNTSTGGESDSLVSSSENTICNEDLYCEFPPXGNMGKGKPAXSSSSNA 329
KT + + P + +S GG+ D ++ +EN + + + P KG+ S ++
Sbjct: 334 KTPIVSNSTPRRGRSSRGGDRDEVIDPTENVVGDSGVEETSP-----RKGRSRRSVATED 388
Query: 328 RKGTKKTRGKQPVVDQTVPAEKRGMRSASNTDS 230
T++ + ++ P + RG RSA+++ +
Sbjct: 389 TSVTEEVENTEHPTEEETPKQGRGRRSAASSSA 421
>ref|NP_524678.2| scribbler CG5580-PA gi|7302641|gb|AAF57721.1| CG5580-PA [Drosophila
melanogaster]
Length = 2280
Score = 35.0 bits (79), Expect = 0.51
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -2
Query: 472 NNTSTGGESDSLVSSSENTIC----NEDLYCEFPPX---GNMGKGKPAXSSSSNARKGTK 314
NN+S+G SS+ NT N PP GN G G + SSSS+ + K
Sbjct: 392 NNSSSGSGGSGSGSSTGNTASGSGNNNSTSAGGPPSSQGGNNGNGSGSSSSSSSGKSSAK 451
Query: 313 KTRGKQPVVDQTVPAE-KRGMRSASNTDSRYERVEA 209
+ Q +D+ + + KR ++++++E V+A
Sbjct: 452 MSIDHQATLDKGLKMKIKRTKPGTKSSEAKHEIVKA 487
>dbj|BAB20792.1| master of thick veins [Drosophila melanogaster]
Length = 2310
Score = 35.0 bits (79), Expect = 0.51
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -2
Query: 472 NNTSTGGESDSLVSSSENTIC----NEDLYCEFPPX---GNMGKGKPAXSSSSNARKGTK 314
NN+S+G SS+ NT N PP GN G G + SSSS+ + K
Sbjct: 402 NNSSSGSGGSGSGSSTGNTASGSGNNNSTSAGGPPSSQGGNNGNGSGSSSSSSSGKSSAK 461
Query: 313 KTRGKQPVVDQTVPAE-KRGMRSASNTDSRYERVEA 209
+ Q +D+ + + KR ++++++E V+A
Sbjct: 462 MSIDHQATLDKGLKMKIKRTKPGTKSSEAKHEIVKA 497
>gb|AAM11146.1| LD21711p [Drosophila melanogaster]
Length = 555
Score = 35.0 bits (79), Expect = 0.51
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -2
Query: 472 NNTSTGGESDSLVSSSENTIC----NEDLYCEFPPX---GNMGKGKPAXSSSSNARKGTK 314
NN+S+G SS+ NT N PP GN G G + SSSS+ + K
Sbjct: 18 NNSSSGSGGSGSGSSTGNTASGSGNNNSTSAGGPPSSQGGNNGNGSGSSSSSSSGKSSAK 77
Query: 313 KTRGKQPVVDQTVPAE-KRGMRSASNTDSRYERVEA 209
+ Q +D+ + + KR ++++++E V+A
Sbjct: 78 MSIDHQATLDKGLKMKIKRTKPGTKSSEAKHEIVKA 113
>gb|AAF70256.1|AF247562_1 Scribbler long isoform [Drosophila melanogaster]
gi|8547308|gb|AAF76322.1|AF242194_1 brakeless-B
[Drosophila melanogaster]
Length = 2302
Score = 35.0 bits (79), Expect = 0.51
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -2
Query: 472 NNTSTGGESDSLVSSSENTIC----NEDLYCEFPPX---GNMGKGKPAXSSSSNARKGTK 314
NN+S+G SS+ NT N PP GN G G + SSSS+ + K
Sbjct: 392 NNSSSGSGGSGSGSSTGNTASGSGNNNSTSAGGPPSSQGGNNGNGSGSSSSSSSGKSSAK 451
Query: 313 KTRGKQPVVDQTVPAE-KRGMRSASNTDSRYERVEA 209
+ Q +D+ + + KR ++++++E V+A
Sbjct: 452 MSIDHQATLDKGLKMKIKRTKPGTKSSEAKHEIVKA 487
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,794,988
Number of Sequences: 1393205
Number of extensions: 8748586
Number of successful extensions: 22014
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 21242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21984
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
