Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020071A_C01 KMC020071A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566800.1| transport inhibitor response 1 (TIR1), putative... 147 1e-34
ref|NP_563915.1| transport inhibitor response 1 (TIR1), putative... 146 3e-34
ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; ... 119 5e-26
gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana] 118 9e-26
ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; pro... 118 9e-26
>ref|NP_566800.1| transport inhibitor response 1 (TIR1), putative; protein id:
At3g26810.1, supported by cDNA: gi_17064983 [Arabidopsis
thaliana] gi|9279671|dbj|BAB01228.1| transport inhibitor
response-like protein [Arabidopsis thaliana]
gi|17064984|gb|AAL32646.1| transport inhibitor
response-like protein [Arabidopsis thaliana]
Length = 575
Score = 147 bits (372), Expect = 1e-34
Identities = 64/81 (79%), Positives = 78/81 (96%)
Frame = +1
Query: 451 MNYFPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRF 630
MNYFPDEVIEHVFD+V SH+DRNA+SLVCKSWY+IE+ +R++VFIGNCY+I+PERL++RF
Sbjct: 1 MNYFPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRF 60
Query: 631 PSLRSLTLKGKPHFADFSLVP 693
P L+SLTLKGKPHFADF+LVP
Sbjct: 61 PCLKSLTLKGKPHFADFNLVP 81
>ref|NP_563915.1| transport inhibitor response 1 (TIR1), putative; protein id:
At1g12820.1, supported by cDNA: gi_20466150 [Arabidopsis
thaliana] gi|25352269|pir||F86261 F13K23.7 protein -
Arabidopsis thaliana gi|8698729|gb|AAF78487.1|AC012187_7
Strong similarity to transport inhibitor response 1
(TIR1) from Arabidopsis thaliana gb|AF005047
gi|20466151|gb|AAM20393.1| transport inhibitor response
1, putative [Arabidopsis thaliana]
gi|25083863|gb|AAN72129.1| transport inhibitor response
1, putative [Arabidopsis thaliana]
Length = 577
Score = 146 bits (368), Expect = 3e-34
Identities = 64/81 (79%), Positives = 77/81 (95%)
Frame = +1
Query: 451 MNYFPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRF 630
MNYFPDEVIEHVFD+V SH+DRN++SLVCKSW++IE+ +RK VFIGNCY+I+PERLI+RF
Sbjct: 1 MNYFPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRF 60
Query: 631 PSLRSLTLKGKPHFADFSLVP 693
P L+SLTLKGKPHFADF+LVP
Sbjct: 61 PCLKSLTLKGKPHFADFNLVP 81
>ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; protein id:
At3g62980.1, supported by cDNA: gi_11935208, supported
by cDNA: gi_2352493 [Arabidopsis thaliana]
gi|11282337|pir||T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana
gi|2352492|gb|AAB69175.1| transport inhibitor response 1
[Arabidopsis thaliana] gi|2352494|gb|AAB69176.1|
transport inhibitor response 1 [Arabidopsis thaliana]
gi|7573427|emb|CAB87743.1| transport inhibitor response
1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
Length = 594
Score = 119 bits (297), Expect = 5e-26
Identities = 50/78 (64%), Positives = 67/78 (85%)
Frame = +1
Query: 460 FPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRFPSL 639
FP+EV+EHVF ++ +DRN++SLVCKSWY IE+ R++VFIGNCY++SP +I+RFP +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 640 RSLTLKGKPHFADFSLVP 693
RS+ LKGKPHFADF+LVP
Sbjct: 69 RSVELKGKPHFADFNLVP 86
>gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 118 bits (295), Expect = 9e-26
Identities = 48/78 (61%), Positives = 66/78 (84%)
Frame = +1
Query: 460 FPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRFPSL 639
FP +V+EH+ ++ S+ DRN++SLVCKSW+ E+ TRKRVF+GNCY++SP + +RFP +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 640 RSLTLKGKPHFADFSLVP 693
RSLTLKGKPHFAD++LVP
Sbjct: 65 RSLTLKGKPHFADYNLVP 82
>ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; protein id:
At4g03190.1, supported by cDNA: gi_12658969, supported
by cDNA: gi_15027884 [Arabidopsis thaliana]
gi|25352265|pir||E85040 hypothetical protein AT4g03190
[imported] - Arabidopsis thaliana
gi|4262147|gb|AAD14447.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|7270189|emb|CAB77804.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|23297438|gb|AAN12969.1| putative F-box protein
AtFBL18 [Arabidopsis thaliana]
Length = 585
Score = 118 bits (295), Expect = 9e-26
Identities = 48/78 (61%), Positives = 66/78 (84%)
Frame = +1
Query: 460 FPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRFPSL 639
FP +V+EH+ ++ S+ DRN++SLVCKSW+ E+ TRKRVF+GNCY++SP + +RFP +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 640 RSLTLKGKPHFADFSLVP 693
RSLTLKGKPHFAD++LVP
Sbjct: 65 RSLTLKGKPHFADYNLVP 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,040,653
Number of Sequences: 1393205
Number of extensions: 11976271
Number of successful extensions: 39427
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 32588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38705
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
