Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019884A_C01 KMC019884A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_602323.1| Rod shape-determining protein mreC [Fusobacteri... 37 0.16
ref|NP_113939.1| Shank1; GKAP/SAPAP interacting protein; SAPAP-i... 35 0.45
sp|Q9WV48|SHK1_RAT SH3 and multiple ankyrin repeat domains prote... 35 0.45
gb|AAD04569.2| synaptic SAPAP-interacting protein Synamon [Rattu... 35 0.45
ref|NP_694232.1| oxidoreductase [Oceanobacillus iheyensis HTE831... 35 0.59
>ref|NP_602323.1| Rod shape-determining protein mreC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19715164|gb|AAL95680.1| Rod
shape-determining protein mreC [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 210
Score = 37.0 bits (84), Expect = 0.16
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Frame = +1
Query: 109 DPHSHIRSLILPTCSSPFDTLSLVCTMDHSNLDHEDGLQAVHQNGGREEQPNFVEDGVVS 288
D +S + + P C T+ V + + D EDGL QP+ VED +
Sbjct: 84 DNYSEVELITNPNCIISAKTMGDVLGIARGS-DEEDGLLYF--------QPSIVEDN-LK 133
Query: 289 NGDSVVAEISETVIPNG-SFGNFNQLDSTATDNLSMTEIKEGLDDTIYGNNVSISKEEEV 465
GD ++ + P G G Q+D +K G + + IS+E V
Sbjct: 134 EGDEIITSGISDIYPEGIKIGKIEQIDEKENYGYKRVTLKPGFESKDLRELIVISRENAV 193
Query: 466 EIVDETEQARGPKGPAK 516
E+ + KG K
Sbjct: 194 NRPIVKEEVKELKGDEK 210
>ref|NP_113939.1| Shank1; GKAP/SAPAP interacting protein; SAPAP-interacting protein
synamon [Rattus norvegicus]
gi|4761595|gb|AAD29417.1|AF131951_1 Shank1a [Rattus
norvegicus]
Length = 2087
Score = 35.4 bits (80), Expect = 0.45
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 461 SSSLEMETLFPYIVSSNPSLISVIDKLSVAVLSNWLK--FPKLPFGITVSDISATTESPF 288
+SSL+ + L S S S++ K S ++ NW K P LP G VS S+T +P
Sbjct: 1842 TSSLQRQRL------SEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVS--SSTAAAPG 1893
Query: 287 ETTPSSTKLGCSSR 246
T+PS++ S+R
Sbjct: 1894 ATSPSASSASASTR 1907
>sp|Q9WV48|SHK1_RAT SH3 and multiple ankyrin repeat domains protein 1 (Shank1)
(GKAP/SAPAP interacting protein) (SPANK-1) (Synamon)
(Somatostatin receptor interacting protein) (SSTR
interacting protein) (SSTRIP)
gi|5381426|gb|AAD42975.1|AF159046_1 SPANK-1 [Rattus
norvegicus]
Length = 2167
Score = 35.4 bits (80), Expect = 0.45
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 461 SSSLEMETLFPYIVSSNPSLISVIDKLSVAVLSNWLK--FPKLPFGITVSDISATTESPF 288
+SSL+ + L S S S++ K S ++ NW K P LP G VS S+T +P
Sbjct: 1922 TSSLQRQRL------SEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVS--SSTAAAPG 1973
Query: 287 ETTPSSTKLGCSSR 246
T+PS++ S+R
Sbjct: 1974 ATSPSASSASASTR 1987
>gb|AAD04569.2| synaptic SAPAP-interacting protein Synamon [Rattus norvegicus]
Length = 2158
Score = 35.4 bits (80), Expect = 0.45
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 461 SSSLEMETLFPYIVSSNPSLISVIDKLSVAVLSNWLK--FPKLPFGITVSDISATTESPF 288
+SSL+ + L S S S++ K S ++ NW K P LP G VS S+T +P
Sbjct: 1913 TSSLQRQRL------SEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVS--SSTAAAPG 1964
Query: 287 ETTPSSTKLGCSSR 246
T+PS++ S+R
Sbjct: 1965 ATSPSASSASASTR 1978
>ref|NP_694232.1| oxidoreductase [Oceanobacillus iheyensis HTE831]
gi|22778999|dbj|BAC15266.1| oxidoreductase
[Oceanobacillus iheyensis]
Length = 257
Score = 35.0 bits (79), Expect = 0.59
Identities = 23/78 (29%), Positives = 36/78 (45%)
Frame = +1
Query: 208 HEDGLQAVHQNGGREEQPNFVEDGVVSNGDSVVAEISETVIPNGSFGNFNQLDSTATDNL 387
+ED +++V G E+ +FV VSN ++V + +T+ G F
Sbjct: 39 NEDAIKSVQAELGLTEENSFVVKADVSNEENVKNYVDQTIAKFGRIDGFVNNAGVEGPAK 98
Query: 388 SMTEIKEGLDDTIYGNNV 441
S+ EI E D +YG NV
Sbjct: 99 SIEEITEKEFDFVYGINV 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.312 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,696,363
Number of Sequences: 1393205
Number of extensions: 10634806
Number of successful extensions: 23577
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 22733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23537
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
