Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019878A_C01 KMC019878A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565050.1| expressed protein; protein id: At1g72970.1, sup... 197 5e-50
pir||T50764 adhesion of calyx edges protein ACE [imported] - Ara... 197 5e-50
gb|AAF88098.1|AC025417_26 T12C24.11 [Arabidopsis thaliana] 162 2e-39
ref|NP_172718.2| hypothetical protein; protein id: At1g12570.1, ... 162 2e-39
gb|AAL47442.1| At1g12570/T12C24_9 [Arabidopsis thaliana] 162 2e-39
>ref|NP_565050.1| expressed protein; protein id: At1g72970.1, supported by cDNA:
gi_15809851 [Arabidopsis thaliana]
gi|11357160|pir||T50765 adhesion of calyx edges protein
ACE [imported] - Arabidopsis thaliana
gi|4903006|dbj|BAA77837.1| ACE [Arabidopsis thaliana]
gi|5903086|gb|AAD55644.1|AC008017_17 ACE [Arabidopsis
thaliana] gi|15809852|gb|AAL06854.1| At1g72970/F3N23_17
[Arabidopsis thaliana] gi|27363290|gb|AAO11564.1|
At1g72970/F3N23_17 [Arabidopsis thaliana]
Length = 594
Score = 197 bits (502), Expect = 5e-50
Identities = 100/143 (69%), Positives = 116/143 (80%), Gaps = 3/143 (2%)
Frame = +1
Query: 133 KLNWHEYGYPFIKKASSFSSPSISTTSLN---NAYDYIILGGGTAGCPLAATLSQNFSVL 303
K ++ Y Y FI KAS+FSS S S+ S N ++YDYI++GGGTAGCPLAATLSQNFSVL
Sbjct: 29 KSKFNPYRYTFIDKASTFSSSSSSSFSSNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVL 88
Query: 304 LLERGGVPFSNPNVTFLSNFHITLADTSPSSASQYFISTDGVLNARARVLGGGSSINAGF 483
+LERGGVPF+N NV+FL NFHI LAD S SSASQ F+STDGV NARARVLGGGS INAGF
Sbjct: 89 VLERGGVPFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGF 148
Query: 484 YTRASTRFIEKVGWDAKLVNESY 552
Y+RA F+++ GWD KLV ESY
Sbjct: 149 YSRADAAFVKRAGWDPKLVKESY 171
>pir||T50764 adhesion of calyx edges protein ACE [imported] - Arabidopsis
thaliana gi|4903018|dbj|BAA77842.1| ACE [Arabidopsis
thaliana]
Length = 594
Score = 197 bits (502), Expect = 5e-50
Identities = 100/143 (69%), Positives = 116/143 (80%), Gaps = 3/143 (2%)
Frame = +1
Query: 133 KLNWHEYGYPFIKKASSFSSPSISTTSLN---NAYDYIILGGGTAGCPLAATLSQNFSVL 303
K ++ Y Y FI KAS+FSS S S+ S N ++YDYI++GGGTAGCPLAATLSQNFSVL
Sbjct: 29 KSKFNPYRYTFIDKASTFSSSSSSSFSSNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVL 88
Query: 304 LLERGGVPFSNPNVTFLSNFHITLADTSPSSASQYFISTDGVLNARARVLGGGSSINAGF 483
+LERGGVPF+N NV+FL NFHI LAD S SSASQ F+STDGV NARARVLGGGS INAGF
Sbjct: 89 VLERGGVPFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGF 148
Query: 484 YTRASTRFIEKVGWDAKLVNESY 552
Y+RA F+++ GWD KLV ESY
Sbjct: 149 YSRADAAFVKRAGWDPKLVKESY 171
>gb|AAF88098.1|AC025417_26 T12C24.11 [Arabidopsis thaliana]
Length = 549
Score = 162 bits (411), Expect = 2e-39
Identities = 83/132 (62%), Positives = 100/132 (74%)
Frame = +1
Query: 157 YPFIKKASSFSSPSISTTSLNNAYDYIILGGGTAGCPLAATLSQNFSVLLLERGGVPFSN 336
Y F++ A+ SP+ S YDYII+GGGTAGCPLAATLSQN SVLLLERG P++N
Sbjct: 8 YSFMRDATG--SPTTSY------YDYIIIGGGTAGCPLAATLSQNASVLLLERGDSPYNN 59
Query: 337 PNVTFLSNFHITLADTSPSSASQYFISTDGVLNARARVLGGGSSINAGFYTRASTRFIEK 516
PN+T LS F L+D S SS SQ F+S DGV+NARARVLGGGS++NAGFYTRA T+++
Sbjct: 60 PNITRLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVRN 119
Query: 517 VGWDAKLVNESY 552
+GWD L NESY
Sbjct: 120 MGWDGALANESY 131
>ref|NP_172718.2| hypothetical protein; protein id: At1g12570.1, supported by cDNA:
gi_17978953 [Arabidopsis thaliana]
Length = 572
Score = 162 bits (411), Expect = 2e-39
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Frame = +1
Query: 172 KASSFSSPSISTTSLNNAY-DYIILGGGTAGCPLAATLSQNFSVLLLERGGVPFSNPNVT 348
KA ++S +T S +Y DYII+GGGTAGCPLAATLSQN SVLLLERG P++NPN+T
Sbjct: 27 KAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGDSPYNNPNIT 86
Query: 349 FLSNFHITLADTSPSSASQYFISTDGVLNARARVLGGGSSINAGFYTRASTRFIEKVGWD 528
LS F L+D S SS SQ F+S DGV+NARARVLGGGS++NAGFYTRA T+++ +GWD
Sbjct: 87 RLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVRNMGWD 146
Query: 529 AKLVNESY 552
L NESY
Sbjct: 147 GALANESY 154
>gb|AAL47442.1| At1g12570/T12C24_9 [Arabidopsis thaliana]
Length = 572
Score = 162 bits (411), Expect = 2e-39
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Frame = +1
Query: 172 KASSFSSPSISTTSLNNAY-DYIILGGGTAGCPLAATLSQNFSVLLLERGGVPFSNPNVT 348
KA ++S +T S +Y DYII+GGGTAGCPLAATLSQN SVLLLERG P++NPN+T
Sbjct: 27 KAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGDSPYNNPNIT 86
Query: 349 FLSNFHITLADTSPSSASQYFISTDGVLNARARVLGGGSSINAGFYTRASTRFIEKVGWD 528
LS F L+D S SS SQ F+S DGV+NARARVLGGGS++NAGFYTRA T+++ +GWD
Sbjct: 87 RLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVRNMGWD 146
Query: 529 AKLVNESY 552
L NESY
Sbjct: 147 GALANESY 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,544,469
Number of Sequences: 1393205
Number of extensions: 11586919
Number of successful extensions: 58342
Number of sequences better than 10.0: 317
Number of HSP's better than 10.0 without gapping: 48419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58136
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
