Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019866A_C01 KMC019866A_c01
(888 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566421.1| F-box protein family; protein id: At3g12350.1, ... 104 2e-21
gb|AAM63646.1| unknown [Arabidopsis thaliana] 104 2e-21
gb|AAG51006.1|AC069474_5 hypothetical protein; 96168-94294 [Arab... 104 2e-21
dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana] 104 2e-21
gb|AAL92369.2| similar to Homo sapiens (Human). Testis intercell... 49 1e-04
>ref|NP_566421.1| F-box protein family; protein id: At3g12350.1, supported by cDNA:
2596. [Arabidopsis thaliana] gi|25054871|gb|AAN71924.1|
putative F-box protein family [Arabidopsis thaliana]
Length = 422
Score = 104 bits (259), Expect = 2e-21
Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Frame = +2
Query: 410 KPKSPNGVNEKSPSSFLYNTLHEWDNLIGFWRRCGSGT---GTPSLLFFEWGPSFLSGSR 580
K K N + P LY TL +NLIGFWR CG +P L+FF+WG SF+ GSR
Sbjct: 60 KTKIQKWANGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSR 119
Query: 581 VSALQPGSYEVAKVPFIRMSLSEEGQEVNLLD---------PDGQADFDSENELIPVNLS 733
V + +YEV K PF+ M +S EG+ N LD D + ++ N L+ V+++
Sbjct: 120 VLSTGDDTYEVKKTPFLLMGISPEGRSENFLDLVGGNLRSVDDDLKELEASNNLVSVDVN 179
Query: 734 FMGKTHFVVEENQFRRSSSYANLSGGGGDDCGGAGEDLIGS 856
FMG H +VEEN+ +++ GD+ +DLI S
Sbjct: 180 FMGNGHIMVEENRCFTNNNRREDQRSSGDE----SDDLISS 216
Score = 85.9 bits (211), Expect = 7e-16
Identities = 36/67 (53%), Positives = 49/67 (72%)
Frame = +1
Query: 253 FSDFPEDVQLCILSFLGPSEIATFACTSKRFLSLCTNDAKLWFTLCHRRWGSETQITKWG 432
F + PED+QL ILS L P+EI++FACTSKRF SLC D K+W +C +RWG +T+I KW
Sbjct: 8 FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67
Query: 433 Q*KIAFK 453
+I ++
Sbjct: 68 NGQIPYR 74
>gb|AAM63646.1| unknown [Arabidopsis thaliana]
Length = 422
Score = 104 bits (259), Expect = 2e-21
Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Frame = +2
Query: 410 KPKSPNGVNEKSPSSFLYNTLHEWDNLIGFWRRCGSGT---GTPSLLFFEWGPSFLSGSR 580
K K N + P LY TL +NLIGFWR CG +P L+FF+WG SF+ GSR
Sbjct: 60 KTKIQKWANGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSR 119
Query: 581 VSALQPGSYEVAKVPFIRMSLSEEGQEVNLLD---------PDGQADFDSENELIPVNLS 733
V + +YEV K PF+ M +S EG+ N LD D + ++ N L+ V+++
Sbjct: 120 VLSTGDDTYEVKKTPFLLMGISPEGRSENFLDLVGGNLRSVDDDLKELEASNNLVSVDVN 179
Query: 734 FMGKTHFVVEENQFRRSSSYANLSGGGGDDCGGAGEDLIGS 856
FMG H +VEEN+ +++ GD+ +DLI S
Sbjct: 180 FMGNGHIMVEENRCFTNNNRREDQRSSGDE----SDDLISS 216
Score = 85.9 bits (211), Expect = 7e-16
Identities = 36/67 (53%), Positives = 49/67 (72%)
Frame = +1
Query: 253 FSDFPEDVQLCILSFLGPSEIATFACTSKRFLSLCTNDAKLWFTLCHRRWGSETQITKWG 432
F + PED+QL ILS L P+EI++FACTSKRF SLC D K+W +C +RWG +T+I KW
Sbjct: 8 FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67
Query: 433 Q*KIAFK 453
+I ++
Sbjct: 68 NGQIPYR 74
>gb|AAG51006.1|AC069474_5 hypothetical protein; 96168-94294 [Arabidopsis thaliana]
Length = 455
Score = 104 bits (259), Expect = 2e-21
Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Frame = +2
Query: 410 KPKSPNGVNEKSPSSFLYNTLHEWDNLIGFWRRCGSGT---GTPSLLFFEWGPSFLSGSR 580
K K N + P LY TL +NLIGFWR CG +P L+FF+WG SF+ GSR
Sbjct: 60 KTKIQKWANGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSR 119
Query: 581 VSALQPGSYEVAKVPFIRMSLSEEGQEVNLLD---------PDGQADFDSENELIPVNLS 733
V + +YEV K PF+ M +S EG+ N LD D + ++ N L+ V+++
Sbjct: 120 VLSTGDDTYEVKKTPFLLMGISPEGRSENFLDLVGGNLRSVDDDLKELEASNNLVSVDVN 179
Query: 734 FMGKTHFVVEENQFRRSSSYANLSGGGGDDCGGAGEDLIGS 856
FMG H +VEEN+ +++ GD+ +DLI S
Sbjct: 180 FMGNGHIMVEENRCFTNNNRREDQRSSGDE----SDDLISS 216
Score = 85.9 bits (211), Expect = 7e-16
Identities = 36/67 (53%), Positives = 49/67 (72%)
Frame = +1
Query: 253 FSDFPEDVQLCILSFLGPSEIATFACTSKRFLSLCTNDAKLWFTLCHRRWGSETQITKWG 432
F + PED+QL ILS L P+EI++FACTSKRF SLC D K+W +C +RWG +T+I KW
Sbjct: 8 FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67
Query: 433 Q*KIAFK 453
+I ++
Sbjct: 68 NGQIPYR 74
>dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana]
Length = 1100
Score = 104 bits (259), Expect = 2e-21
Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Frame = +2
Query: 410 KPKSPNGVNEKSPSSFLYNTLHEWDNLIGFWRRCGSGT---GTPSLLFFEWGPSFLSGSR 580
K K N + P LY TL +NLIGFWR CG +P L+FF+WG SF+ GSR
Sbjct: 60 KTKIQKWANGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSR 119
Query: 581 VSALQPGSYEVAKVPFIRMSLSEEGQEVNLLD---------PDGQADFDSENELIPVNLS 733
V + +YEV K PF+ M +S EG+ N LD D + ++ N L+ V+++
Sbjct: 120 VLSTGDDTYEVKKTPFLLMGISPEGRSENFLDLVGGNLRSVDDDLKELEASNNLVSVDVN 179
Query: 734 FMGKTHFVVEENQFRRSSSYANLSGGGGDDCGGAGEDLIGS 856
FMG H +VEEN+ +++ GD+ +DLI S
Sbjct: 180 FMGNGHIMVEENRCFTNNNRREDQRSSGDE----SDDLISS 216
Score = 85.9 bits (211), Expect = 7e-16
Identities = 36/67 (53%), Positives = 49/67 (72%)
Frame = +1
Query: 253 FSDFPEDVQLCILSFLGPSEIATFACTSKRFLSLCTNDAKLWFTLCHRRWGSETQITKWG 432
F + PED+QL ILS L P+EI++FACTSKRF SLC D K+W +C +RWG +T+I KW
Sbjct: 8 FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67
Query: 433 Q*KIAFK 453
+I ++
Sbjct: 68 NGQIPYR 74
>gb|AAL92369.2| similar to Homo sapiens (Human). Testis intercellular mediator Peas
(Sortilin 1) (Hypothetical protein) (Testis
intracellular mediator protein) [Dictyostelium
discoideum]
Length = 447
Score = 48.5 bits (114), Expect = 1e-04
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Frame = +1
Query: 187 KSITEMATNLN------DPNSSSSSVVSFS-----DFPEDVQLCILSFLGPSEIATFACT 333
K IT+ N N N S S ++S +FP++V L ILSFL P++I +
Sbjct: 16 KQITQFKINRNGSSGCGSSNESGSLLISIKIEHILEFPDEVLLTILSFLEPNDIKNIYLS 75
Query: 334 SKRFLSLCTNDAKLWFTLCHRRWGS-----ETQITKW 429
S R+LS + K+W +C R+W S IT W
Sbjct: 76 S-RYLSRFCFENKIWKAICKRKWSSSPIFKRKPITNW 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 890,219,865
Number of Sequences: 1393205
Number of extensions: 23090370
Number of successful extensions: 192905
Number of sequences better than 10.0: 638
Number of HSP's better than 10.0 without gapping: 107088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174448
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48218255001
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
