Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019864A_C01 KMC019864A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, sup... 90 2e-17
gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|2213612... 90 2e-17
gb|ZP_00006706.1| hypothetical protein [Rhodobacter sphaeroides] 40 0.022
ref|NP_756680.1| Hypothetical sugar kinase yihV [Escherichia col... 38 0.084
ref|NP_458027.1| putative sugar kinase [Salmonella enterica subs... 36 0.24
>ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, supported by cDNA:
gi_16226360 [Arabidopsis thaliana]
gi|16226361|gb|AAL16146.1|AF428378_1 unknown protein
[Arabidopsis thaliana] gi|21928053|gb|AAM78055.1|
At4g29227 [Arabidopsis thaliana]
Length = 401
Score = 89.7 bits (221), Expect = 2e-17
Identities = 41/52 (78%), Positives = 44/52 (83%)
Frame = -2
Query: 527 AFIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHRTDPHLASFI 372
AFIGA++YAICA M PEKMLPFAAQVA CRALGARTGLPHRTDP L F+
Sbjct: 349 AFIGAVLYAICAGMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPFL 400
>gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|22136124|gb|AAM91140.1|
unknown protein [Arabidopsis thaliana]
Length = 404
Score = 89.7 bits (221), Expect = 2e-17
Identities = 41/52 (78%), Positives = 44/52 (83%)
Frame = -2
Query: 527 AFIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHRTDPHLASFI 372
AFIGA++YAICA M PEKMLPFAAQVA CRALGARTGLPHRTDP L F+
Sbjct: 352 AFIGAVLYAICAGMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPFL 403
>gb|ZP_00006706.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 299
Score = 39.7 bits (91), Expect = 0.022
Identities = 20/43 (46%), Positives = 22/43 (50%)
Frame = -2
Query: 524 FIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHRT 396
F GA A+ PE L FAA AA+KCR G R P RT
Sbjct: 248 FHGAFALALAEGQPPEDALRFAAATAALKCRGSGGRASYPGRT 290
>ref|NP_756680.1| Hypothetical sugar kinase yihV [Escherichia coli CFT073]
gi|26111071|gb|AAN83254.1|AE016770_54 Hypothetical sugar
kinase yihV [Escherichia coli CFT073]
Length = 315
Score = 37.7 bits (86), Expect = 0.084
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 524 FIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHR 399
F GA+ A+ M ++ + FA+ VAA+KC G R G+P+R
Sbjct: 263 FHGALAVALAEKMPTKEAIRFASAVAAMKCTQPGGRAGIPNR 304
>ref|NP_458027.1| putative sugar kinase [Salmonella enterica subsp. enterica serovar
Typhi] gi|16767289|ref|NP_462904.1| putative sugar
kinase [Salmonella typhimurium LT2]
gi|29143898|ref|NP_807240.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|25287470|pir||AH0947 probable sugar kinase STY3854
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18) gi|6979883|gb|AAF34639.1|AF220439_1
YihV [Salmonella typhimurium] gi|16422587|gb|AAL22863.1|
putative sugar kinase [Salmonella typhimurium LT2]
gi|16504714|emb|CAD09602.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29139534|gb|AAO71100.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 298
Score = 36.2 bits (82), Expect = 0.24
Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 2/53 (3%)
Frame = -2
Query: 524 FIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLP--HRTDPHLASFI 372
F GA+ + + + A E+ + FA+ VAA+KC G R G+P +T L+ F+
Sbjct: 246 FHGALAFGLASGYAIEEAVRFASGVAALKCTRPGGRAGIPDCEQTRSFLSLFV 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,859,513
Number of Sequences: 1393205
Number of extensions: 9768285
Number of successful extensions: 25343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25304
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
