Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019860A_C01 KMC019860A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196434.1| putative protein; protein id: At5g08170.1 [Arab... 316 2e-85
dbj|BAC43189.1| unknown protein [Arabidopsis thaliana] gi|289509... 316 2e-85
dbj|BAB59127.1| hypothetical protein [Arabidopsis thaliana] 312 2e-84
ref|NP_248983.1| conserved hypothetical protein [Pseudomonas aer... 234 8e-61
ref|NP_795120.1| conserved hypothetical protein [Pseudomonas syr... 229 1e-59
>ref|NP_196434.1| putative protein; protein id: At5g08170.1 [Arabidopsis thaliana]
gi|11281495|pir||T50502 hypothetical protein T22D6.110 -
Arabidopsis thaliana gi|8346554|emb|CAB93718.1| putative
protein [Arabidopsis thaliana]
Length = 383
Score = 316 bits (809), Expect = 2e-85
Identities = 141/191 (73%), Positives = 160/191 (82%)
Frame = +2
Query: 2 ERVTVCASSAQWENARSQLPDHIRVIEISCNDSWFRDTGPTFVVMRNTSNSGGSDHRIAG 181
E VTVCAS AQWENAR QLP+ IRV+E+S NDSWFRD+GPTF+V + + IAG
Sbjct: 58 EPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAG 117
Query: 182 IDWSFNSWGGLEEGCYTDWSLDNLVAKKVLEIEGIPRFSHSMVLEGGSIHVDGEGTCLTT 361
IDW+FN+WGG +GCY DWS D LV++K+L +E IPRF HSM+LEGGSIHVDGEGTCL T
Sbjct: 118 IDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVT 177
Query: 362 EECLLNKNRNPHLSKNQIEDELKAYLGVRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVV 541
EECLLNKNRNPH+SK QIE+ELK YLGV+ IWLPRGLYGD+DTNGHIDNMCCF RPGVV
Sbjct: 178 EECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVV 237
Query: 542 LLSWTDDEIDP 574
LLSWTDDE DP
Sbjct: 238 LLSWTDDETDP 248
>dbj|BAC43189.1| unknown protein [Arabidopsis thaliana] gi|28950963|gb|AAO63405.1|
At5g08170 [Arabidopsis thaliana]
Length = 383
Score = 316 bits (809), Expect = 2e-85
Identities = 141/191 (73%), Positives = 160/191 (82%)
Frame = +2
Query: 2 ERVTVCASSAQWENARSQLPDHIRVIEISCNDSWFRDTGPTFVVMRNTSNSGGSDHRIAG 181
E VTVCAS AQWENAR QLP+ IRV+E+S NDSWFRD+GPTF+V + + IAG
Sbjct: 58 EPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAG 117
Query: 182 IDWSFNSWGGLEEGCYTDWSLDNLVAKKVLEIEGIPRFSHSMVLEGGSIHVDGEGTCLTT 361
IDW+FN+WGG +GCY DWS D LV++K+L +E IPRF HSM+LEGGSIHVDGEGTCL T
Sbjct: 118 IDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVT 177
Query: 362 EECLLNKNRNPHLSKNQIEDELKAYLGVRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVV 541
EECLLNKNRNPH+SK QIE+ELK YLGV+ IWLPRGLYGD+DTNGHIDNMCCF RPGVV
Sbjct: 178 EECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVV 237
Query: 542 LLSWTDDEIDP 574
LLSWTDDE DP
Sbjct: 238 LLSWTDDETDP 248
>dbj|BAB59127.1| hypothetical protein [Arabidopsis thaliana]
Length = 379
Score = 312 bits (800), Expect = 2e-84
Identities = 140/191 (73%), Positives = 159/191 (82%)
Frame = +2
Query: 2 ERVTVCASSAQWENARSQLPDHIRVIEISCNDSWFRDTGPTFVVMRNTSNSGGSDHRIAG 181
E VTVCAS AQWENAR QLP+ IRV+E+S NDSWFRD+GPTF+V + + IAG
Sbjct: 54 ELVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAG 113
Query: 182 IDWSFNSWGGLEEGCYTDWSLDNLVAKKVLEIEGIPRFSHSMVLEGGSIHVDGEGTCLTT 361
IDW+FN+W G +GCY DWS D LV++K+L +E IPRF HSM+LEGGSIHVDGEGTCL T
Sbjct: 114 IDWNFNAWVGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVT 173
Query: 362 EECLLNKNRNPHLSKNQIEDELKAYLGVRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVV 541
EECLLNKNRNPH+SK QIE+ELK YLGV+ IWLPRGLYGD+DTNGHIDNMCCF RPGVV
Sbjct: 174 EECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVV 233
Query: 542 LLSWTDDEIDP 574
LLSWTDDE DP
Sbjct: 234 LLSWTDDETDP 244
>ref|NP_248983.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11347634|pir||F83608 conserved hypothetical protein
PA0292 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9946136|gb|AAG03681.1|AE004467_3 agmatine deiminase
[Pseudomonas aeruginosa PAO1]
Length = 368
Score = 234 bits (596), Expect = 8e-61
Identities = 114/193 (59%), Positives = 144/193 (74%), Gaps = 2/193 (1%)
Frame = +2
Query: 2 ERVTVCASSAQWENARSQLPD-HIRVIEISCNDSWFRDTGPTFVVMRNTSNSGGSDHRIA 178
E VTVCAS+ Q+ENAR++L D +IRV+EIS +D+W RDTGPTFV+ + G +
Sbjct: 58 EPVTVCASAGQYENARARLDDGNIRVVEISSDDAWVRDTGPTFVI----DDKGD----VR 109
Query: 179 GIDWSFNSWGGLEEGCYTDWSLDNLVAKKVLEIEGIPRF-SHSMVLEGGSIHVDGEGTCL 355
G+DW FN+WGG E G Y W D+ VA+K+LEIE R+ + VLEGGSIHVDGEGT +
Sbjct: 110 GVDWGFNAWGGFEGGLYFPWQRDDQVARKILEIERRARYRTDDFVLEGGSIHVDGEGTLI 169
Query: 356 TTEECLLNKNRNPHLSKNQIEDELKAYLGVRKVIWLPRGLYGDDDTNGHIDNMCCFVRPG 535
TTEECLLN NRNPHLS+ +IE L+ YL V +IWLP GLY +D+T+GH+DN CC+ RPG
Sbjct: 170 TTEECLLNHNRNPHLSQAEIERTLRDYLAVESIIWLPNGLY-NDETDGHVDNFCCYARPG 228
Query: 536 VVLLSWTDDEIDP 574
VLL+WTDD+ DP
Sbjct: 229 EVLLAWTDDQDDP 241
>ref|NP_795120.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000] gi|28855756|gb|AAO58815.1| conserved
hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 368
Score = 229 bits (585), Expect = 1e-59
Identities = 111/193 (57%), Positives = 144/193 (74%), Gaps = 2/193 (1%)
Frame = +2
Query: 2 ERVTVCASSAQWENARSQLP-DHIRVIEISCNDSWFRDTGPTFVVMRNTSNSGGSDHRIA 178
E VTV S+AQ++NAR++L +IRV+E+S ND+W RD+GPTFV+ N G +
Sbjct: 58 EPVTVAVSAAQYDNARARLDMPNIRVVEMSSNDAWVRDSGPTFVI-----NDRGE---LR 109
Query: 179 GIDWSFNSWGGLEEGCYTDWSLDNLVAKKVLEIEGIPRFS-HSMVLEGGSIHVDGEGTCL 355
G++W FN+WGG + G Y W+LD+ V KVLEIE PR++ VLEGGSIHVDGEGT +
Sbjct: 110 GVNWEFNAWGGFDGGLYAPWNLDSQVGSKVLEIERCPRYATQGFVLEGGSIHVDGEGTLI 169
Query: 356 TTEECLLNKNRNPHLSKNQIEDELKAYLGVRKVIWLPRGLYGDDDTNGHIDNMCCFVRPG 535
TTEECLLN+NRNPHL++ QIE L YL V K+IWLP GL+ +D+T+GH+DN CC++RPG
Sbjct: 170 TTEECLLNRNRNPHLTREQIEAVLSDYLAVDKIIWLPDGLF-NDETDGHVDNFCCYIRPG 228
Query: 536 VVLLSWTDDEIDP 574
VLL+WTDD DP
Sbjct: 229 EVLLAWTDDPEDP 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,665,096
Number of Sequences: 1393205
Number of extensions: 11058747
Number of successful extensions: 27402
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 26435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27272
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
