Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019859A_C01 KMC019859A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175137.1| light-harvesting chlorophyll a/b binding protei... 167 8e-41
pir||T52328 chlorophyll a/b-binding protein Lhca5, photosystem I... 167 8e-41
gb|AAM65689.1| light-harvesting complex protein [Arabidopsis tha... 165 2e-40
gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type II... 104 7e-22
pir||S04125 chlorophyll a/b-binding protein type III precursor -... 103 2e-21
>ref|NP_175137.1| light-harvesting chlorophyll a/b binding protein; protein id:
At1g45474.2, supported by cDNA: 41745., supported by
cDNA: gi_17063198, supported by cDNA: gi_19699115,
supported by cDNA: gi_4741941 [Arabidopsis thaliana]
gi|25299021|pir||F96510 light-harvesting complex protein
[imported] - Arabidopsis thaliana
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting
complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4
[Arabidopsis thaliana] gi|19699116|gb|AAL90924.1|
At1g45474/F2G19.4 [Arabidopsis thaliana]
Length = 256
Score = 167 bits (422), Expect = 8e-41
Identities = 82/98 (83%), Positives = 90/98 (91%), Gaps = 1/98 (1%)
Frame = -3
Query: 508 SQAKEGSFF-GLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAIL 332
SQAKEGSFF GLEA+ EGLEPGYPGGPLLNPLGLAKD++NA + KLKEIKNGRLAM+A+L
Sbjct: 159 SQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAML 218
Query: 331 GIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 218
G FVQASVTH GPIDNLVEHLSNPWHKT+IQTL +S S
Sbjct: 219 GFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>pir||T52328 chlorophyll a/b-binding protein Lhca5, photosystem I [imported] -
Arabidopsis thaliana gi|4741942|gb|AAD28768.1|AF134121_1
Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 167 bits (422), Expect = 8e-41
Identities = 82/98 (83%), Positives = 90/98 (91%), Gaps = 1/98 (1%)
Frame = -3
Query: 508 SQAKEGSFF-GLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAIL 332
SQAKEGSFF GLEA+ EGLEPGYPGGPLLNPLGLAKD++NA + KLKEIKNGRLAM+A+L
Sbjct: 159 SQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAML 218
Query: 331 GIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 218
G FVQASVTH GPIDNLVEHLSNPWHKT+IQTL +S S
Sbjct: 219 GFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 165 bits (418), Expect = 2e-40
Identities = 81/98 (82%), Positives = 89/98 (90%), Gaps = 1/98 (1%)
Frame = -3
Query: 508 SQAKEGSFF-GLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAIL 332
SQAKEGSFF G+EA+ EGLEPGYPGGPLLNPLGLAKD+KNA + KLKEIKNGRLAM+A+L
Sbjct: 159 SQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAML 218
Query: 331 GIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 218
G FVQASVTH GPIDNLVEHLSNPWH T+IQTL +S S
Sbjct: 219 GFFVQASVTHTGPIDNLVEHLSNPWHXTIIQTLFTSTS 256
>gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 104 bits (259), Expect = 7e-22
Identities = 52/89 (58%), Positives = 62/89 (69%), Gaps = 6/89 (6%)
Frame = -3
Query: 502 AKEGS-----FFGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMV 341
AK GS F GLE G +P YPGGP NPLG KD K+ +E KLKE+KNGRLAM+
Sbjct: 104 AKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML 163
Query: 340 AILGIFVQASVTHVGPIDNLVEHLSNPWH 254
AILG F+Q VT VGP NL++HL++PWH
Sbjct: 164 AILGYFIQGLVTGVGPFQNLLDHLADPWH 192
>pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato
gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 103 bits (256), Expect = 2e-21
Identities = 55/96 (57%), Positives = 67/96 (69%), Gaps = 6/96 (6%)
Frame = -3
Query: 502 AKEGS-----FFGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMV 341
AK GS F GLE G +P YPGGPL NPLG KD K+ +E KLKEIKNGRLAM+
Sbjct: 175 AKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAML 234
Query: 340 AILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 233
AILG F+QA VT VGP NL++HL++P + V+ +L
Sbjct: 235 AILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,060,922
Number of Sequences: 1393205
Number of extensions: 9519724
Number of successful extensions: 28120
Number of sequences better than 10.0: 387
Number of HSP's better than 10.0 without gapping: 25137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27970
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
