Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019843A_C01 KMC019843A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD00694.1| bifunctional nuclease [Zinnia elegans] 120 6e-27
ref|NP_680734.1| expressed protein; protein id: At4g21585.1 [Ara... 120 1e-26
dbj|BAB18299.1| putative bifunctional nuclease [Oryza sativa (ja... 116 1e-25
gb|AAM65542.1| endonuclease, putative [Arabidopsis thaliana] 114 6e-25
ref|NP_567631.1| endonuclease, putative; protein id: At4g21600.1... 114 6e-25
>gb|AAD00694.1| bifunctional nuclease [Zinnia elegans]
Length = 280
Score = 120 bits (302), Expect = 6e-27
Identities = 55/92 (59%), Positives = 69/92 (74%)
Frame = -1
Query: 493 SDMVEFVDALQTNITKVWSDEVEEWESCGSDEIACPIIYASESSIDACKWAYADASEGTT 314
S++ +DA++TNIT VW D+V+ WE+C +++ CP IYA+E AC WAY + G+
Sbjct: 188 SNVENLIDAIETNITNVWGDQVKAWENCSANQKTCPNIYATEGIKAACNWAYKGVTNGSV 247
Query: 313 LGDDYFLSRLPIVNLRLAQGGVRLAATLNRIF 218
L DDYFLSRLPIVN RLAQGGVRLAA LNRIF
Sbjct: 248 LEDDYFLSRLPIVNWRLAQGGVRLAANLNRIF 279
>ref|NP_680734.1| expressed protein; protein id: At4g21585.1 [Arabidopsis thaliana]
Length = 299
Score = 120 bits (300), Expect = 1e-26
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = -1
Query: 475 VDALQTNITKVWSDEVEEWESCGSDEIACPIIYASESSIDACKWAYADASEGTTLGDDYF 296
++ALQ N+T WS++V WESC ++ ACP YASES ACK+AY +A+ GTTLGDDYF
Sbjct: 205 IEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYF 264
Query: 295 LSRLPIVNLRLAQGGVRLAATLNRIFDTE 209
LSRLPIV RLAQGG+RLAATLNRIF ++
Sbjct: 265 LSRLPIVEKRLAQGGIRLAATLNRIFSSK 293
>dbj|BAB18299.1| putative bifunctional nuclease [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 116 bits (291), Expect = 1e-25
Identities = 57/90 (63%), Positives = 63/90 (69%)
Frame = -1
Query: 487 MVEFVDALQTNITKVWSDEVEEWESCGSDEIACPIIYASESSIDACKWAYADASEGTTLG 308
+ EFVDAL NIT WS V WE C ++ CP YASES AC WAY D +E + L
Sbjct: 221 VAEFVDALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLE 280
Query: 307 DDYFLSRLPIVNLRLAQGGVRLAATLNRIF 218
D YF SRLP+VNLRLAQGGVRLAATLNRIF
Sbjct: 281 DAYFGSRLPVVNLRLAQGGVRLAATLNRIF 310
>gb|AAM65542.1| endonuclease, putative [Arabidopsis thaliana]
Length = 296
Score = 114 bits (285), Expect = 6e-25
Identities = 54/96 (56%), Positives = 70/96 (72%)
Frame = -1
Query: 496 DSDMVEFVDALQTNITKVWSDEVEEWESCGSDEIACPIIYASESSIDACKWAYADASEGT 317
+S + + ALQ + WS++V W+SC + ACP +YASES ACK+AY +A+ GT
Sbjct: 195 NSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLACKYAYRNATPGT 254
Query: 316 TLGDDYFLSRLPIVNLRLAQGGVRLAATLNRIFDTE 209
TLGD+YFLSRLP+V RLAQGG+RLAATLNRIF +
Sbjct: 255 TLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFSAK 290
>ref|NP_567631.1| endonuclease, putative; protein id: At4g21600.1, supported by cDNA:
40247. [Arabidopsis thaliana]
Length = 296
Score = 114 bits (285), Expect = 6e-25
Identities = 54/96 (56%), Positives = 70/96 (72%)
Frame = -1
Query: 496 DSDMVEFVDALQTNITKVWSDEVEEWESCGSDEIACPIIYASESSIDACKWAYADASEGT 317
+S + + ALQ + WS++V W+SC + ACP +YASES ACK+AY +A+ GT
Sbjct: 195 NSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLACKYAYRNATPGT 254
Query: 316 TLGDDYFLSRLPIVNLRLAQGGVRLAATLNRIFDTE 209
TLGD+YFLSRLP+V RLAQGG+RLAATLNRIF +
Sbjct: 255 TLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFSAK 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,531,060
Number of Sequences: 1393205
Number of extensions: 8178781
Number of successful extensions: 18176
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 17723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18163
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
