Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019833A_C01 KMC019833A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK37555.1|AF349572_1 SHOOT1 protein [Glycine max] 132 1e-30
gb|AAM66135.1| unknown [Arabidopsis thaliana] 122 8e-28
ref|NP_564691.1| expressed protein; protein id: At1g55480.1, sup... 122 8e-28
gb|AAF81798.1| putative tyrosine phosphatase [Oryza sativa] 110 4e-24
pir||A96597 hypothetical protein T5A14.12 [imported] - Arabidops... 83 9e-16
>gb|AAK37555.1|AF349572_1 SHOOT1 protein [Glycine max]
Length = 359
Score = 132 bits (332), Expect = 1e-30
Identities = 65/72 (90%), Positives = 70/72 (96%)
Frame = -3
Query: 444 YSKLNQIKAALSSLEEALNSGFEDFKRIRSDPDLANLRASEDFDPLIKRFDESFINENAI 265
YSKLNQI+AALSSLEEALN+GFEDFKRIR+DPDLAN RASE+FDPL+KRFDESFINENAI
Sbjct: 288 YSKLNQIQAALSSLEEALNTGFEDFKRIRTDPDLANARASEEFDPLLKRFDESFINENAI 347
Query: 264 NAIKSLFGFNKK 229
NAIKSLFGF KK
Sbjct: 348 NAIKSLFGFGKK 359
>gb|AAM66135.1| unknown [Arabidopsis thaliana]
Length = 335
Score = 122 bits (307), Expect = 8e-28
Identities = 59/72 (81%), Positives = 67/72 (92%)
Frame = -3
Query: 444 YSKLNQIKAALSSLEEALNSGFEDFKRIRSDPDLANLRASEDFDPLIKRFDESFINENAI 265
YSKLNQ++A LS+LEEAL SG+EDFKRIRSDPDL LR S+DFDPL+K+FDESFINE+AI
Sbjct: 264 YSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQFDESFINESAI 323
Query: 264 NAIKSLFGFNKK 229
NAIKSLFGFNKK
Sbjct: 324 NAIKSLFGFNKK 335
>ref|NP_564691.1| expressed protein; protein id: At1g55480.1, supported by cDNA:
8301., supported by cDNA: gi_14532603, supported by
cDNA: gi_19310718 [Arabidopsis thaliana]
gi|14532604|gb|AAK64030.1| unknown protein [Arabidopsis
thaliana] gi|19310719|gb|AAL85090.1| unknown protein
[Arabidopsis thaliana]
Length = 335
Score = 122 bits (307), Expect = 8e-28
Identities = 59/72 (81%), Positives = 67/72 (92%)
Frame = -3
Query: 444 YSKLNQIKAALSSLEEALNSGFEDFKRIRSDPDLANLRASEDFDPLIKRFDESFINENAI 265
YSKLNQ++A LS+LEEAL SG+EDFKRIRSDPDL LR S+DFDPL+K+FDESFINE+AI
Sbjct: 264 YSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQFDESFINESAI 323
Query: 264 NAIKSLFGFNKK 229
NAIKSLFGFNKK
Sbjct: 324 NAIKSLFGFNKK 335
>gb|AAF81798.1| putative tyrosine phosphatase [Oryza sativa]
Length = 240
Score = 110 bits (275), Expect = 4e-24
Identities = 51/72 (70%), Positives = 66/72 (90%)
Frame = -3
Query: 444 YSKLNQIKAALSSLEEALNSGFEDFKRIRSDPDLANLRASEDFDPLIKRFDESFINENAI 265
YSKL++I+A +S+LE+AL +G+EDFKRIR+DPDL NLR +E+F+ L+ ++DESFINENAI
Sbjct: 169 YSKLDRIQAGISALEDALKAGYEDFKRIRTDPDLENLRKTEEFNVLLNKYDESFINENAI 228
Query: 264 NAIKSLFGFNKK 229
NAIKSLFGFNKK
Sbjct: 229 NAIKSLFGFNKK 240
>pir||A96597 hypothetical protein T5A14.12 [imported] - Arabidopsis thaliana
gi|4204267|gb|AAD10648.1| Unknown protein [Arabidopsis
thaliana]
Length = 315
Score = 82.8 bits (203), Expect = 9e-16
Identities = 39/47 (82%), Positives = 44/47 (92%)
Frame = -3
Query: 369 KRIRSDPDLANLRASEDFDPLIKRFDESFINENAINAIKSLFGFNKK 229
+RIRSDPDL LR S+DFDPL+K+FDESFINE+AINAIKSLFGFNKK
Sbjct: 269 QRIRSDPDLETLRKSKDFDPLLKQFDESFINESAINAIKSLFGFNKK 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,001,355
Number of Sequences: 1393205
Number of extensions: 7085542
Number of successful extensions: 16308
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 15977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16305
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
