Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019819A_C01 KMC019819A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F22845 hypothetical protein 6 - Trypanosoma brucei mitochon... 36 0.42
gb|AAN75020.1| chromosome scaffold protein p85 [Moneuplotes cras... 36 0.42
pir||S56026 hypothetical protein YJL084c - yeast (Saccharomyces ... 35 0.54
ref|NP_012451.1| Hypothetical ORF; Yjl084cp [Saccharomyces cerev... 35 0.54
ref|XP_130275.2| similar to matrin cyclophilin (matrin-cyp) [Rat... 35 0.54
>pir||F22845 hypothetical protein 6 - Trypanosoma brucei mitochondrion
Length = 347
Score = 35.8 bits (81), Expect = 0.42
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = -2
Query: 239 VEDASFCLFGLWCYFWFLLFSTFLFLAFFYIFSSSSFCSFSFWPRDVFYVGILG*LL*FL 60
+E+ FC + L+C F+F+++ F F+ F F F+ D+F V IL + +L
Sbjct: 138 MENVMFCAY-LFCLFYFVIYFLFCFIFFVIRCLFIVIMDFLFFNFDIF-VSILLCDIVYL 195
Query: 59 VLESFLLLLVPFIINIV 9
S LLL FI N +
Sbjct: 196 DFISLLLLYFNFIFNFI 212
>gb|AAN75020.1| chromosome scaffold protein p85 [Moneuplotes crassus]
Length = 542
Score = 35.8 bits (81), Expect = 0.42
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 54 KDQELQQLAKDPHIEDITRP-KRKGTKTRR*ENVEECKKQKSRE**KPKVTPKSK*TK-- 224
K E Q + + + ED + KR+ K + E E ++++ E PK + KSK TK
Sbjct: 154 KKGENQNSSDEEYEEDTPKKSKRQAKKASKDEESSEAEEEEESEKESPKKSKKSKATKPA 213
Query: 225 RSIFNPTRVAAT*GQQSSSISETEHPEEE 311
+ + PT+ A T ++ I E + P E+
Sbjct: 214 KKVVKPTKAAKT--AKTKKIEEDDEPSED 240
>pir||S56026 hypothetical protein YJL084c - yeast (Saccharomyces cerevisiae)
gi|929872|emb|CAA58486.1| J0934 [Saccharomyces
cerevisiae]
Length = 1046
Score = 35.4 bits (80), Expect = 0.54
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +1
Query: 25 KGTKSSRNDSRTRNYSN*PRIPT*KTSRGQKEKEQKLEDEKM*KNARNRKVENNRNQK*H 204
K T N+ + R S P P+ K S K + K E + K K+E N++++
Sbjct: 704 KDTVLHDNNQKRRPNSKHPTPPSLKASHPNKNSD-KNSSETLNKKESMSKIEENKHKRET 762
Query: 205 QSPNRQNEASSTLLEWQRHKASKAPQSARQSTQKKR 312
R+N +L QR ++ + + QS +K R
Sbjct: 763 TPKKRENRDVKSLSTPQREESKDSTSTGNQSNEKNR 798
>ref|NP_012451.1| Hypothetical ORF; Yjl084cp [Saccharomyces cerevisiae]
gi|2506765|sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa
protein in EXO70-ARP4 intergenic region
gi|895905|emb|CAA61319.1| hypothetical protein
[Saccharomyces cerevisiae] gi|2131083|emb|CAA89377.1|
ORF YJL084c [Saccharomyces cerevisiae]
Length = 1046
Score = 35.4 bits (80), Expect = 0.54
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +1
Query: 25 KGTKSSRNDSRTRNYSN*PRIPT*KTSRGQKEKEQKLEDEKM*KNARNRKVENNRNQK*H 204
K T N+ + R S P P+ K S K + K E + K K+E N++++
Sbjct: 704 KDTVLHDNNQKRRPNSKHPTPPSLKASHPNKNSD-KNSSETLNKKESMSKIEENKHKRET 762
Query: 205 QSPNRQNEASSTLLEWQRHKASKAPQSARQSTQKKR 312
R+N +L QR ++ + + QS +K R
Sbjct: 763 TPKKRENRDVKSLSTPQREESKDSTSTGNQSNEKNR 798
>ref|XP_130275.2| similar to matrin cyclophilin (matrin-cyp) [Rattus norvegicus] [Mus
musculus]
Length = 752
Score = 35.4 bits (80), Expect = 0.54
Identities = 24/103 (23%), Positives = 46/103 (44%)
Frame = +1
Query: 22 MKGTKSSRNDSRTRNYSN*PRIPT*KTSRGQKEKEQKLEDEKM*KNARNRKVENNRNQK* 201
+KG KS N+ + R P + KE+K+ D + + NRKVE + K
Sbjct: 379 IKGDKSELNEIKENQ-----RSPV-------RVKEKKITDHRHMSESPNRKVEKEKKAKD 426
Query: 202 HQSPNRQNEASSTLLEWQRHKASKAPQSARQSTQKKRNIRSSS 330
H+S +++ + + ++ +K + + ++ K RS S
Sbjct: 427 HKSESKERDIRRNSEKDDKYNKNKVKKRGKSKSRSKSKERSKS 469
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,157,564
Number of Sequences: 1393205
Number of extensions: 12252598
Number of successful extensions: 52341
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 47998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51878
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
