Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019806A_C01 KMC019806A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16453.1| P0019D06.11 [Oryza sativa (japonica cultivar-gro... 63 1e-09
ref|NP_196193.1| putative protein; protein id: At5g05740.1 [Arab... 55 5e-07
dbj|BAC22459.1| similar to gag-pol polyprotein [Oryza sativa (ja... 32 4.4
gb|EAA04734.1| agCP3639 [Anopheles gambiae str. PEST] 31 5.7
ref|NP_267397.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact... 31 7.4
>dbj|BAB16453.1| P0019D06.11 [Oryza sativa (japonica cultivar-group)]
Length = 481
Score = 63.2 bits (152), Expect = 1e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = -1
Query: 470 SDEITDPDQKYVALGVAVLLLGLLVCLPYPFPFTDETLTSF 348
S+EIT+P+ Y+++GVA+LL GLLVCLPYPFPF LT F
Sbjct: 439 SEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDF 479
>ref|NP_196193.1| putative protein; protein id: At5g05740.1 [Arabidopsis thaliana]
gi|9759099|dbj|BAB09668.1|
gene_id:MJJ3.15~pir||S77290~similar to unknown protein
[Arabidopsis thaliana]
Length = 556
Score = 54.7 bits (130), Expect = 5e-07
Identities = 24/34 (70%), Positives = 28/34 (81%)
Frame = -1
Query: 470 SDEITDPDQKYVALGVAVLLLGLLVCLPYPFPFT 369
++EIT PD KYV+LG+ VL L LLVCLPYPF FT
Sbjct: 514 AEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 547
>dbj|BAC22459.1| similar to gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1009
Score = 31.6 bits (70), Expect = 4.4
Identities = 31/108 (28%), Positives = 47/108 (42%), Gaps = 5/108 (4%)
Frame = -2
Query: 340 NGLQTRAAVHLECQYTKVFRTEGTL*YSQGVKIPTLAHMLGE*SSVKILGFK-----RPS 176
NGL R H+E T VFR EG + + T+AH++ E +KI K RP
Sbjct: 483 NGL--RKEHHMEKPRT-VFREEGEDDVTMAITDATIAHIMDEQEDIKIKSSKCWNPIRPP 539
Query: 175 FVIHDSLVMGIFLLILNSSCSLCIRLEFGA*NNYLKK*ESRMSNAYNM 32
L+ ++ C +CIR F A ++ S +SN ++
Sbjct: 540 TT-----------LLTSNGCRICIRPPFSACEYLMESSWSPLSNGSSL 576
>gb|EAA04734.1| agCP3639 [Anopheles gambiae str. PEST]
Length = 482
Score = 31.2 bits (69), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 333 RPLFLETCEGFICKWERIWQTYQQA*EQNC 422
+PL L+ C +C W + Q YQ+ E NC
Sbjct: 413 KPLMLDWCSVGLCNWSDVKQKYQRFTEGNC 442
>ref|NP_267397.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gi|25373549|pir||A86780 hypothetical protein ymgI
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12724213|gb|AAK05339.1|AE006356_5 UNKNOWN
PROTEIN [Lactococcus lactis subsp. lactis]
Length = 186
Score = 30.8 bits (68), Expect = 7.4
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 419 VLLLGLLVCLPYPFPFTDETLTSF*K*WPPNSGSSALRVSVHEGF 285
+L+L L+V L YP + D LTS N+G L+ S EGF
Sbjct: 64 ILILALIVILFYPLTYMDVQLTS-------NNGDLTLKKSAIEGF 101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,592,037
Number of Sequences: 1393205
Number of extensions: 7137236
Number of successful extensions: 12644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12639
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
