Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019736A_C01 KMC019736A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42172.1| unknown protein [Arabidopsis thaliana] 154 9e-37
ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arab... 153 1e-36
gb|AAM67327.1| putative cyclin [Arabidopsis thaliana] 111 5e-24
ref|NP_174084.1| putative cyclin; protein id: At1g27630.1, suppo... 111 5e-24
ref|NP_193695.1| putative protein; protein id: At4g19600.1 [Arab... 100 9e-21
>dbj|BAC42172.1| unknown protein [Arabidopsis thaliana]
Length = 541
Score = 154 bits (388), Expect = 9e-37
Identities = 75/103 (72%), Positives = 83/103 (79%)
Frame = +3
Query: 243 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 422
MAG+L GD S S S S + Q+ +RWYF RKEIEENSPS+ D +DLKKE YLR
Sbjct: 1 MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60
Query: 423 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR 551
KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF+RQSHA+NDRR
Sbjct: 61 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRR 103
>ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arabidopsis thaliana]
gi|9759604|dbj|BAB11392.1| contains similarity to
cyclin~gene_id:K18C1.7 [Arabidopsis thaliana]
Length = 583
Score = 153 bits (387), Expect = 1e-36
Identities = 78/107 (72%), Positives = 84/107 (77%), Gaps = 4/107 (3%)
Frame = +3
Query: 243 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 422
MAG+L G+ S+ S S S + QE SRWYF RKEIEENSPS+ DG+DLKKE YLR
Sbjct: 1 MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60
Query: 423 KSYCTFLQDLGMRLKV----PQVTIATAIIFCHRFFLRQSHAKNDRR 551
KSYCTFLQDLGMRLKV PQVTIATAIIFCHRFF RQSHAKNDRR
Sbjct: 61 KSYCTFLQDLGMRLKVFPISPQVTIATAIIFCHRFFFRQSHAKNDRR 107
>gb|AAM67327.1| putative cyclin [Arabidopsis thaliana]
Length = 317
Score = 111 bits (278), Expect = 5e-24
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = +3
Query: 333 SRWYFSRKEIEENSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHR 512
S+WYFSR+EIE SPS++DG+DL KE++LR SYCTFLQ LGM+L V QVTI+ A++ CHR
Sbjct: 32 SKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHR 91
Query: 513 FFLRQSHAKND 545
F++RQSHAKND
Sbjct: 92 FYMRQSHAKND 102
>ref|NP_174084.1| putative cyclin; protein id: At1g27630.1, supported by cDNA:
33877., supported by cDNA: gi_12744988 [Arabidopsis
thaliana] gi|5668773|gb|AAD46000.1|AC005916_12 Contains
similarity to gb|AF113001 silencing mediator of retinoic
acid and thyroid hormone receptor alpha and gb|AF109179
cyclin T1 from Mus musculus. ESTs gb|N95317, gb|Z29139
and gb|Z30853 come from this gene. [Arabidopsis
thaliana] gi|12744989|gb|AAK06874.1|AF344323_1 putative
cyclin [Arabidopsis thaliana]
gi|26450460|dbj|BAC42344.1| putative cyclin [Arabidopsis
thaliana]
Length = 317
Score = 111 bits (278), Expect = 5e-24
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = +3
Query: 333 SRWYFSRKEIEENSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHR 512
S+WYFSR+EIE SPS++DG+DL KE++LR SYCTFLQ LGM+L V QVTI+ A++ CHR
Sbjct: 32 SKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHR 91
Query: 513 FFLRQSHAKND 545
F++RQSHAKND
Sbjct: 92 FYMRQSHAKND 102
>ref|NP_193695.1| putative protein; protein id: At4g19600.1 [Arabidopsis thaliana]
gi|7486085|pir||T06153 hypothetical protein F24J7.161 -
Arabidopsis thaliana gi|4582488|emb|CAB40377.1| putative
protein [Arabidopsis thaliana]
gi|7268756|emb|CAB78962.1| putative protein [Arabidopsis
thaliana]
Length = 533
Score = 100 bits (250), Expect = 9e-21
Identities = 50/76 (65%), Positives = 56/76 (72%)
Frame = +3
Query: 243 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 422
MAG+L GD S S S S + Q+ +RWYF RKEIEENSPS+ D +DLKKE YLR
Sbjct: 1 MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60
Query: 423 KSYCTFLQDLGMRLKV 470
KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,482,283
Number of Sequences: 1393205
Number of extensions: 9395980
Number of successful extensions: 28775
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 27133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28659
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
