Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019726A_C01 KMC019726A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO20276.1| annexin 11b [Danio rerio] 35 0.50
emb|CAA72125.1| annexin max4 [Oryzias latipes] 35 0.65
ref|XP_223315.1| similar to ribosomal protein S17 [Rattus norveg... 35 0.65
ref|NP_199061.1| putative protein; protein id: At5g42460.1 [Arab... 34 1.1
gb|AAO64816.1| At5g42460 [Arabidopsis thaliana] 34 1.1
>gb|AAO20276.1| annexin 11b [Danio rerio]
Length = 485
Score = 35.4 bits (80), Expect = 0.50
Identities = 27/80 (33%), Positives = 38/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 173 QELKLRLYNSNVQFPIY--RSAFSNQRSLITMTL**LVFRSNPNP*ASSEVEKLDSGKSL 346
+EL L + S QF + A S + + L RSN + + K + GKSL
Sbjct: 243 EELVLAMLKSPAQFDASECKEAISGAGTDEACLIEILSSRSNAEIKEINRIYKAEYGKSL 302
Query: 347 EPSQRRDSSGHLVRLLESIC 406
E + D+SGH RLL S+C
Sbjct: 303 EDAISNDTSGHFRRLLVSLC 322
>emb|CAA72125.1| annexin max4 [Oryzias latipes]
Length = 508
Score = 35.0 bits (79), Expect = 0.65
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 284 RSNPNP*ASSEVEKLDSGKSLEPSQRRDSSGHLVRLLESIC 406
RSN ++V K + GK+LE S D+SGH RLL S+C
Sbjct: 305 RSNAEIIEINKVYKAEYGKTLEDSISSDTSGHFRRLLVSLC 345
>ref|XP_223315.1| similar to ribosomal protein S17 [Rattus norvegicus]
Length = 268
Score = 35.0 bits (79), Expect = 0.65
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Frame = -3
Query: 533 LQFIAFSNVNHPKKHVFSELLNPPSEYNSNHTFWTEIMGPCNGIYFLKGEPNVLMN-PFF 357
++ IAF + H S LL P NS+++ W E G NG++ K +P V+ + P
Sbjct: 85 IKIIAFRTASRKDSHDISALLKKPGISNSSNSMWREETG-LNGLF--KKDPRVMTSTPTS 141
Query: 356 ETVQGFFQNP 327
E +G +P
Sbjct: 142 ECARGSLSSP 151
>ref|NP_199061.1| putative protein; protein id: At5g42460.1 [Arabidopsis thaliana]
gi|9759482|dbj|BAB10487.1|
gene_id:MDH9.16~pir||T00841~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 385
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/56 (35%), Positives = 32/56 (56%)
Frame = -2
Query: 336 PESNFSTSDDAYGLGFDLKTNYYKVIVIKDLWFENAER*IGNWTLELYSLNFNSWR 169
P +++ D+ Y LG+D K N+ K++ +KD ++ ER ELYS NSW+
Sbjct: 140 PRNSYHRKDN-YALGYDEKKNH-KILRLKDNYYAPRERIC---EFELYSFESNSWK 190
>gb|AAO64816.1| At5g42460 [Arabidopsis thaliana]
Length = 324
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/56 (35%), Positives = 32/56 (56%)
Frame = -2
Query: 336 PESNFSTSDDAYGLGFDLKTNYYKVIVIKDLWFENAER*IGNWTLELYSLNFNSWR 169
P +++ D+ Y LG+D K N+ K++ +KD ++ ER ELYS NSW+
Sbjct: 79 PRNSYHRKDN-YALGYDEKKNH-KILRLKDNYYAPRERIC---EFELYSFESNSWK 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,964,809
Number of Sequences: 1393205
Number of extensions: 10352221
Number of successful extensions: 23652
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23628
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
