Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019725A_C01 KMC019725A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182287.1| putative dTDP-glucose 4-6-dehydratase; protein ... 122 3e-27
pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidops... 121 5e-27
ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; prote... 121 5e-27
gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza ... 115 4e-25
dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa ... 109 2e-23
>ref|NP_182287.1| putative dTDP-glucose 4-6-dehydratase; protein id: At2g47650.1
[Arabidopsis thaliana] gi|7437249|pir||T00419
dTDP-glucose 4-6-dehydratase homolog At2g47650 -
Arabidopsis thaliana gi|20196965|gb|AAM14846.1| putative
dTDP-glucose 4-6-dehydratase [Arabidopsis thaliana]
Length = 443
Score = 122 bits (305), Expect = 3e-27
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = -2
Query: 503 LELAQVVQETIDPSAKIEFRPNTEDDPHMRKPDISKAKELLGWKPSVSLREGLPKMVTDF 324
LELA+VVQETIDP+AKIEFRPNTEDDPH RKPDI+KAKELLGW+P V+LR+GLP MV DF
Sbjct: 364 LELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVALRQGLPLMVKDF 423
Query: 323 RQRLLGDSKSTKTXGASA 270
RQR+ GD K + +S+
Sbjct: 424 RQRVFGDQKQDSSTTSSS 441
>pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis thaliana
gi|928932|emb|CAA89205.1| homolog of dTDP-glucose
4-6-dehydratases [Arabidopsis thaliana]
gi|13605583|gb|AAK32785.1|AF361617_1 AT3g62830/F26K9_260
[Arabidopsis thaliana]
gi|14595664|gb|AAK70881.1|AF387788_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
gi|1585435|prf||2124427B diamide resistance gene
Length = 445
Score = 121 bits (303), Expect = 5e-27
Identities = 57/77 (74%), Positives = 65/77 (84%)
Frame = -2
Query: 503 LELAQVVQETIDPSAKIEFRPNTEDDPHMRKPDISKAKELLGWKPSVSLREGLPKMVTDF 324
LELA+VVQETIDP+A IEFRPNTEDDPH RKPDI+KAKELLGW+P VSLR+GLP MV DF
Sbjct: 362 LELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDF 421
Query: 323 RQRLLGDSKSTKTXGAS 273
RQR+ GD K + A+
Sbjct: 422 RQRVFGDQKEGSSAAAT 438
>ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; protein id: At3g62830.1
[Arabidopsis thaliana] gi|11270077|pir||T48072
dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis
thaliana gi|7362763|emb|CAB83133.1| dTDP-glucose
4-6-dehydratase homolog D18 [Arabidopsis thaliana]
gi|23505953|gb|AAN28836.1| At3g62830/F26K9_260
[Arabidopsis thaliana]
Length = 445
Score = 121 bits (303), Expect = 5e-27
Identities = 57/77 (74%), Positives = 65/77 (84%)
Frame = -2
Query: 503 LELAQVVQETIDPSAKIEFRPNTEDDPHMRKPDISKAKELLGWKPSVSLREGLPKMVTDF 324
LELA+VVQETIDP+A IEFRPNTEDDPH RKPDI+KAKELLGW+P VSLR+GLP MV DF
Sbjct: 362 LELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDF 421
Query: 323 RQRLLGDSKSTKTXGAS 273
RQR+ GD K + A+
Sbjct: 422 RQRVFGDQKEGSSAAAT 438
>gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza sativa]
Length = 231
Score = 115 bits (287), Expect = 4e-25
Identities = 52/70 (74%), Positives = 63/70 (89%)
Frame = -2
Query: 503 LELAQVVQETIDPSAKIEFRPNTEDDPHMRKPDISKAKELLGWKPSVSLREGLPKMVTDF 324
LELA+VVQ+TIDP+A+IEFRPNT DDPH RKPDI++AKELLGW+P V LREGLP MVTDF
Sbjct: 162 LELAKVVQDTIDPNARIEFRPNTADDPHKRKPDITRAKELLGWEPKVPLREGLPLMVTDF 221
Query: 323 RQRLLGDSKS 294
R+R+ GD ++
Sbjct: 222 RKRIFGDQEA 231
>dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 410
Score = 109 bits (272), Expect = 2e-23
Identities = 52/67 (77%), Positives = 58/67 (85%)
Frame = -2
Query: 503 LELAQVVQETIDPSAKIEFRPNTEDDPHMRKPDISKAKELLGWKPSVSLREGLPKMVTDF 324
LELAQVV+ETIDP A IEF+PNT DDPHMRKPDI+KAK LL W+P VSLREGLP MV DF
Sbjct: 344 LELAQVVKETIDPMATIEFKPNTADDPHMRKPDITKAKHLLRWEPKVSLREGLPLMVKDF 403
Query: 323 RQRLLGD 303
RQR+L +
Sbjct: 404 RQRILDE 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,250,742
Number of Sequences: 1393205
Number of extensions: 8881479
Number of successful extensions: 28061
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 27161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28036
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
