Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019657A_C01 KMC019657A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O82515|MTD_MEDSA Probable mannitol dehydrogenase (NAD-depende... 323 7e-88
sp|Q43137|MTD1_STYHU Probable mannitol dehydrogenase 1 (NAD-depe... 290 7e-78
gb|AAM64913.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis ... 270 7e-72
ref|NP_195643.1| cinnamyl-alcohol dehydrogenase CAD1; protein id... 270 7e-72
sp|P42734|MTDH_ARATH Probable mannitol dehydrogenase (NAD-depend... 270 7e-72
>sp|O82515|MTD_MEDSA Probable mannitol dehydrogenase (NAD-dependent mannitol
dehydrogenase) gi|3603401|gb|AAC35846.1|
cinnamyl-alcohol dehydrogenase [Medicago sativa]
gi|17028156|gb|AAL34328.1|L46856_1 cinnamyl-alcohol
dehydrogenase [Medicago sativa]
Length = 359
Score = 323 bits (829), Expect = 7e-88
Identities = 146/167 (87%), Positives = 159/167 (94%)
Frame = +3
Query: 75 MAKSPESELPLKAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKND 254
MAKSPE+ELPLKAFGWAARDTSG LSPFHFSRRENGDDDV++KIL+CGVCHSDLHT+KND
Sbjct: 1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKND 60
Query: 255 WGFTTYPVVPGHEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQP 434
WGFTTYPVVPGHEIVGVVTK G NV KF+VGD VGVGVIV+SC++CENC+QDLE YCP+P
Sbjct: 61 WGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKP 120
Query: 435 VYTYNSPYNGTRTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAG 575
V+TYNSPY GTRT GGYSDFVVVHQRYV+QFPDNLPLDAGAPLLCAG
Sbjct: 121 VFTYNSPYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAG 167
>sp|Q43137|MTD1_STYHU Probable mannitol dehydrogenase 1 (NAD-dependent mannitol
dehydrogenase 1) gi|556422|gb|AAA74882.1|
cinnamyl-alcohol dehydrogenase
Length = 354
Score = 290 bits (743), Expect = 7e-78
Identities = 129/156 (82%), Positives = 143/156 (90%)
Frame = +3
Query: 108 KAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKNDWGFTTYPVVPG 287
KAFGWAA+D SG LSPFHF+RR+N DDV +KIL+CGVCHSDLHT+KNDWGFTTYPVVPG
Sbjct: 5 KAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPG 64
Query: 288 HEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQPVYTYNSPYNGT 467
HEI G+VTK G+NVTKFK GD+VGVGVIVDSC+ CE C QDLE+YCP+PV+TYNSPY GT
Sbjct: 65 HEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPYKGT 124
Query: 468 RTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAG 575
RT GGYSDFVVVHQR+VLQFPDNLPLDAGAPLLCAG
Sbjct: 125 RTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAG 160
>gb|AAM64913.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana]
Length = 360
Score = 270 bits (691), Expect = 7e-72
Identities = 123/168 (73%), Positives = 145/168 (86%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 MAKSPESELPLKAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKND 254
MAKSPE+E P K FGW ARD SGVLSPFHFSRR+NG++DV +KILFCGVCH+DLHTIKND
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 255 WGFTTYPVVPGHEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQP 434
WG++ YPVVPGHEIVG+ TK G NVTKFK GD+VGVGVI SC+SCE+CDQDLENYCPQ
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 435 VYTYNS-PYNGTRTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAG 575
+TYN+ +GT+ GGYS+ +VV QR+VL+FP+NLP D+GAPLLCAG
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAG 168
>ref|NP_195643.1| cinnamyl-alcohol dehydrogenase CAD1; protein id: At4g39330.1,
supported by cDNA: 34593., supported by cDNA:
gi_13877594, supported by cDNA: gi_17978764 [Arabidopsis
thaliana] gi|7430944|pir||T08581 cinnamyl-alcohol
dehydrogenase (EC 1.1.1.195) CAD1 - Arabidopsis thaliana
gi|4914445|emb|CAB43648.1| cinnamyl-alcohol
dehydrogenase CAD1 [Arabidopsis thaliana]
gi|7270917|emb|CAB80596.1| cinnamyl-alcohol
dehydrogenase CAD1 [Arabidopsis thaliana]
gi|13877595|gb|AAK43875.1|AF370498_1 cinnamyl-alcohol
dehydrogenase CAD1 [Arabidopsis thaliana]
gi|17978765|gb|AAL47376.1| cinnamyl-alcohol
dehydrogenase CAD1 [Arabidopsis thaliana]
Length = 360
Score = 270 bits (691), Expect = 7e-72
Identities = 123/168 (73%), Positives = 145/168 (86%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 MAKSPESELPLKAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKND 254
MAKSPE+E P K FGW ARD SGVLSPFHFSRR+NG++DV +KILFCGVCH+DLHTIKND
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 255 WGFTTYPVVPGHEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQP 434
WG++ YPVVPGHEIVG+ TK G NVTKFK GD+VGVGVI SC+SCE+CDQDLENYCPQ
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 435 VYTYNS-PYNGTRTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAG 575
+TYN+ +GT+ GGYS+ +VV QR+VL+FP+NLP D+GAPLLCAG
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAG 168
>sp|P42734|MTDH_ARATH Probable mannitol dehydrogenase (NAD-dependent mannitol
dehydrogenase) gi|598071|gb|AAA99511.1| cinnamyl-alcohol
dehydrogenase
Length = 360
Score = 270 bits (691), Expect = 7e-72
Identities = 123/168 (73%), Positives = 145/168 (86%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 MAKSPESELPLKAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKND 254
MAKSPE+E P K FGW ARD SGVLSPFHFSRR+NG++DV +KILFCGVCH+DLHTIKND
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 255 WGFTTYPVVPGHEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQP 434
WG++ YPVVPGHEIVG+ TK G NVTKFK GD+VGVGVI SC+SCE+CDQDLENYCPQ
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 435 VYTYNS-PYNGTRTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAG 575
+TYN+ +GT+ GGYS+ +VV QR+VL+FP+NLP D+GAPLLCAG
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAG 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,448,851
Number of Sequences: 1393205
Number of extensions: 13805423
Number of successful extensions: 65530
Number of sequences better than 10.0: 1695
Number of HSP's better than 10.0 without gapping: 52674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
