Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019627A_C01 KMC019627A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42280.1| unknown protein [Arabidopsis thaliana] gi|2897340... 57 2e-07
pir||C86271 F21F23.21 protein - Arabidopsis thaliana gi|8920582|... 57 2e-07
gb|EAA14045.1| agCP8427 [Anopheles gambiae str. PEST] 33 2.2
emb|CAA48518.1| GTPase-activating protein of Ypt6 [Saccharomyces... 33 2.8
ref|NP_012491.1| GTPase-activating protein for Ypt6; Gyp6p [Sacc... 33 2.8
>gb|AAO42280.1| unknown protein [Arabidopsis thaliana] gi|28973405|gb|AAO64027.1|
unknown protein [Arabidopsis thaliana]
Length = 440
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = -3
Query: 535 SEGQMWMENQYEVFIQKLKSLGWKTERLLSP-IIWRAHWIYEPLEEKTD 392
SEG+ W++ Y+ + KL+S GWKTERLLSP I WRA+WI K D
Sbjct: 392 SEGEAWIDKHYDELLHKLRSGGWKTERLLSPSITWRANWISHTSAAKFD 440
>pir||C86271 F21F23.21 protein - Arabidopsis thaliana
gi|8920582|gb|AAF81304.1|AC027656_21 Contains similarity
to CG10338 gene product from Drosophila melanogaster
gb|AE003660. [Arabidopsis thaliana]
Length = 438
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = -3
Query: 535 SEGQMWMENQYEVFIQKLKSLGWKTERLLSP-IIWRAHWIYEPLEEKTD 392
SEG+ W++ Y+ + KL+S GWKTERLLSP I WRA+WI K D
Sbjct: 390 SEGEAWIDKHYDELLHKLRSGGWKTERLLSPSITWRANWISHTSAAKFD 438
>gb|EAA14045.1| agCP8427 [Anopheles gambiae str. PEST]
Length = 124
Score = 33.1 bits (74), Expect = 2.2
Identities = 19/48 (39%), Positives = 27/48 (55%)
Frame = +1
Query: 199 LSCRTSGKS*ITCKIPYNNISVISPPHLWEIPYNSTSHQITSIPP*LP 342
LS R+S KS I K+ YN+ + + PP + P + S S+PP LP
Sbjct: 28 LSRRSSSKSSIKKKVAYNDSTEVIPPPEYPPPEDDDSVFSDSVPPKLP 75
>emb|CAA48518.1| GTPase-activating protein of Ypt6 [Saccharomyces cerevisiae]
gi|445088|prf||1908396A GTPase-activating protein
Length = 458
Score = 32.7 bits (73), Expect = 2.8
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = +2
Query: 107 PIRTFTYKPPSLTALLRNKVQVQXVTWSSFLYLAELQGNHK*LVKYHIITFQSFHLPIFG 286
P +T + K ++ L+ + + + + W+ L+L EL + +V H++TF ++ L IF
Sbjct: 266 PPKTGSGKKKNVDHLIHSNL-IWLIRWTRLLFLRELPLKYVLIVWDHVLTF-NYPLDIFI 323
Query: 287 KYLIIQLHIK*HQSLHSFHQSHSLEH 364
II L + + LH EH
Sbjct: 324 ACTIITLLLSIYDELHELVSQGDYEH 349
>ref|NP_012491.1| GTPase-activating protein for Ypt6; Gyp6p [Saccharomyces
cerevisiae] gi|1170142|sp|P32806|GYP6_YEAST
GTPase-activating protein GYP6 (GAP for YPT6)
gi|1077143|pir||S56816 GTPase-activating protein GYP6 -
yeast (Saccharomyces cerevisiae)
gi|1008173|emb|CAA89335.1| ORF YJL044c [Saccharomyces
cerevisiae]
Length = 458
Score = 32.7 bits (73), Expect = 2.8
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = +2
Query: 107 PIRTFTYKPPSLTALLRNKVQVQXVTWSSFLYLAELQGNHK*LVKYHIITFQSFHLPIFG 286
P +T + K ++ L+ + + + + W+ L+L EL + +V H++TF ++ L IF
Sbjct: 266 PPKTGSGKKKNVDHLIHSNL-IWLIRWTRLLFLRELPLKYVLIVWDHVLTF-NYPLDIFI 323
Query: 287 KYLIIQLHIK*HQSLHSFHQSHSLEH 364
II L + + LH EH
Sbjct: 324 ACTIITLLLSIYDELHELVSQGDYEH 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,868,646
Number of Sequences: 1393205
Number of extensions: 8589104
Number of successful extensions: 17991
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17987
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
