Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019499A_C01 KMC019499A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P59287|CASS_RICCO Casbene synthase, chloroplast precursor 74 4e-13
ref|NP_197784.1| terpene synthase/cyclase family; protein id: At... 69 1e-11
dbj|BAB08719.1| (+)-delta-cadinene synthase (d-cadinene synthase... 69 1e-11
gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] 67 4e-11
sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A (D-ca... 66 9e-11
>sp|P59287|CASS_RICCO Casbene synthase, chloroplast precursor
Length = 601
Score = 73.9 bits (180), Expect = 4e-13
Identities = 34/84 (40%), Positives = 58/84 (68%)
Frame = -1
Query: 425 VECCMKQYNISQEEAYKLIHKDMTDLWMVINEECLKLDRIPNPVLECILNVARVTEFTYE 246
++C M Q+ +S++EA K++ K TD W INEEC++ ++ L I+N+AR+T+ +Y+
Sbjct: 517 IDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYK 576
Query: 245 NFEDRYTNAELLKEYVVSLLVDPI 174
+ D YT+++ LK++V L VDPI
Sbjct: 577 -YGDGYTDSQQLKQFVKGLFVDPI 599
>ref|NP_197784.1| terpene synthase/cyclase family; protein id: At5g23960.1
[Arabidopsis thaliana] gi|28396620|emb|CAD66638.1|
putative delta-cadinene synthase, PUP8 [Arabidopsis
thaliana]
Length = 545
Score = 69.3 bits (168), Expect = 1e-11
Identities = 31/84 (36%), Positives = 58/84 (68%)
Frame = -1
Query: 425 VECCMKQYNISQEEAYKLIHKDMTDLWMVINEECLKLDRIPNPVLECILNVARVTEFTYE 246
++C M+Q+ +S+E A +++ ++D W +N+E ++ P P+L +LN++RV + Y
Sbjct: 461 IDCYMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFY- 519
Query: 245 NFEDRYTNAELLKEYVVSLLVDPI 174
++D YTN +LLKE++VSLL++ I
Sbjct: 520 RYQDAYTNPKLLKEHIVSLLIETI 543
>dbj|BAB08719.1| (+)-delta-cadinene synthase (d-cadinene synthase) [Arabidopsis
thaliana]
Length = 522
Score = 69.3 bits (168), Expect = 1e-11
Identities = 31/84 (36%), Positives = 58/84 (68%)
Frame = -1
Query: 425 VECCMKQYNISQEEAYKLIHKDMTDLWMVINEECLKLDRIPNPVLECILNVARVTEFTYE 246
++C M+Q+ +S+E A +++ ++D W +N+E ++ P P+L +LN++RV + Y
Sbjct: 438 IDCYMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFY- 496
Query: 245 NFEDRYTNAELLKEYVVSLLVDPI 174
++D YTN +LLKE++VSLL++ I
Sbjct: 497 RYQDAYTNPKLLKEHIVSLLIETI 520
>gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos]
Length = 560
Score = 67.4 bits (163), Expect = 4e-11
Identities = 33/85 (38%), Positives = 52/85 (60%)
Frame = -1
Query: 428 AVECCMKQYNISQEEAYKLIHKDMTDLWMVINEECLKLDRIPNPVLECILNVARVTEFTY 249
AVEC Q+ +S+EEA K + ++ + W INEE L +P P+L+ +L AR F Y
Sbjct: 474 AVECYKNQHGVSEEEAVKELLLEVANSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIY 533
Query: 248 ENFEDRYTNAELLKEYVVSLLVDPI 174
++ DRYT++ ++K V LL +P+
Sbjct: 534 DDGHDRYTHSLMMKRQVALLLTEPL 558
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A (D-cadinene synthase)
gi|1002523|gb|AAB41259.1| (+)-delta-cadinene synthase
isozyme A gi|1217956|emb|CAA65289.1| (+)-delta-cadinene
synthase [Gossypium arboreum]
Length = 555
Score = 66.2 bits (160), Expect = 9e-11
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -1
Query: 428 AVECCMKQYNISQEEAYKLIHKDMTDLWMVINEECLKLDRIPNPVLECILNVARVTEFTY 249
A+EC MKQY ++ +EAY +K + W +NEE LK +P PVL LN+ARV + Y
Sbjct: 469 AIECYMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLY 528
Query: 248 ENFEDRYTN-AELLKEYVVSLLVDPI 174
D YT+ + K + SLL+DPI
Sbjct: 529 RE-GDGYTHVGKAAKGGITSLLIDPI 553
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,684,174
Number of Sequences: 1393205
Number of extensions: 5836662
Number of successful extensions: 12694
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 12496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12672
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
