Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019486A_C01 KMC019486A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198092.1| putative protein; protein id: At5g27400.1 [Arab... 60 1e-08
ref|NP_713920.1| conserved hypothetical protein [Leptospira inte... 31 5.6
ref|NP_715017.1| Threonyl-tRNA synthetase [Wigglesworthia brevip... 30 9.5
>ref|NP_198092.1| putative protein; protein id: At5g27400.1 [Arabidopsis thaliana]
gi|29029094|gb|AAO64926.1| At5g27400 [Arabidopsis
thaliana]
Length = 369
Score = 60.1 bits (144), Expect = 1e-08
Identities = 33/59 (55%), Positives = 41/59 (68%), Gaps = 1/59 (1%)
Frame = -1
Query: 452 VAYIACVVRNVETFNYFLSLADQAKLDIMDLTDSLKP-VNLLQYMQSYNQTGVRLLRIT 279
VAYIA V+RNV+TFN L+LADQ L I D+T L P LL YM SY+++ VRL I+
Sbjct: 309 VAYIASVIRNVDTFNVCLTLADQMDLSITDVTAELTPRFELLPYMHSYDRSTVRLFSIS 367
>ref|NP_713920.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24197737|gb|AAN50938.1|AE011530_4
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 649
Score = 31.2 bits (69), Expect = 5.6
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 377 LDIMDLTDSLKPVNLLQYMQSYNQTGV-RLLRITCSHTIRQV*DDHLSFTCYHFLCYL 207
L I TDS P LL+ +Q+Y+QT + RI +H I ++ + +FT Y L L
Sbjct: 440 LSISVRTDSYNPNTLLKLVQNYSQTLLNNNERIELNHRIEKLSKSNTNFTVYIILILL 497
>ref|NP_715017.1| Threonyl-tRNA synthetase [Wigglesworthia brevipalpis]
gi|25166036|dbj|BAC24227.1| thrS [Wigglesworthia
brevipalpis]
Length = 636
Score = 30.4 bits (67), Expect = 9.5
Identities = 16/70 (22%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Frame = -1
Query: 464 KEAPVAYIACVVRNVETFNYFLS---LADQAKLDIMDLTDSLKPVNLLQYMQSYNQTGVR 294
KE Y ++ ++ F+ LS +A + ++D+++ + L+ ++ N+ G+R
Sbjct: 9 KEILFNYPISIIEIIKKFDKNLSENCIAAKINGKLLDVSEIINYDGSLELVKPENKIGIR 68
Query: 293 LLRITCSHTI 264
++R +CSH +
Sbjct: 69 IIRCSCSHLL 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,900,124
Number of Sequences: 1393205
Number of extensions: 6117292
Number of successful extensions: 12009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12006
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
