Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019473A_C01 KMC019473A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07394 probable potassium channel beta chain KB1 - potato g... 318 2e-86
ref|NP_171963.1| putative K+ channel, beta subunit; protein id: ... 314 6e-85
gb|AAA87294.1| K+ channel protein 310 1e-83
emb|CAA12646.1| potassium channel beta subunit [Egeria densa] 308 4e-83
gb|AAN31464.1| K+ channel protein [Phytophthora infestans] 214 8e-55
>pir||T07394 probable potassium channel beta chain KB1 - potato
gi|3402279|emb|CAA04451.1| putative beta-subunit of K+
channels [Solanum tuberosum]
Length = 330
Score = 318 bits (816), Expect = 2e-86
Identities = 149/169 (88%), Positives = 161/169 (95%)
Frame = +2
Query: 68 KMQYKNLGRSGLKVSQLSYGAWVSFGNQLDV*ETKSLLQCWREHGVNFFDNAEVYANGRA 247
+MQYKNLGRSGLKVSQLSYGAWV+FGNQLDV E K+LLQC R+HGVNFFDNAEVYANGRA
Sbjct: 2 QMQYKNLGRSGLKVSQLSYGAWVTFGNQLDVKEAKTLLQCCRDHGVNFFDNAEVYANGRA 61
Query: 248 EEIMGQAIRELGWKRSDIVVSTKIFWGGPGPHDKGLSRKHIVEGTPASLQKLDMEYVDVI 427
E IMGQAIRELGWKRSDIVVSTKIFWGG GP+DKGLSRKHI+EGT ASL++LDM+YVD+I
Sbjct: 62 ERIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHIIEGTKASLKRLDMDYVDLI 121
Query: 428 YCHRPDTSTPIEETVRAMNFVIDQGWAFYWGTSEWSAQQITEAWAVAHR 574
YCHRPDTSTPIEETVRAMN+VID+GWAFYWGTSEWSAQQITEAW VA R
Sbjct: 122 YCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGVAQR 170
>ref|NP_171963.1| putative K+ channel, beta subunit; protein id: At1g04690.1,
supported by cDNA: 23300., supported by cDNA:
gi_1063414, supported by cDNA: gi_15292774, supported by
cDNA: gi_20259254, supported by cDNA: gi_3126867
[Arabidopsis thaliana] gi|25316224|pir||T52133 potassium
channel beta subunit homolog [imported] - Arabidopsis
thaliana gi|2494112|gb|AAB80621.1| Match to Arabidopsis
ATHKCP (gb|L40948). ESTs gb|ATTS0764, gb|R90646,
gb|AA389809, gb|ATTS2615 come from this gene.
[Arabidopsis thaliana] gi|3126868|gb|AAC15999.1|
potassium channel beta subunit homolog [Arabidopsis
thaliana] gi|15292775|gb|AAK92756.1| putative K+
channel, beta subunit [Arabidopsis thaliana]
gi|20259255|gb|AAM14363.1| putative potassium channel
beta subunit [Arabidopsis thaliana]
Length = 328
Score = 314 bits (804), Expect = 6e-85
Identities = 145/168 (86%), Positives = 159/168 (94%)
Frame = +2
Query: 71 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDV*ETKSLLQCWREHGVNFFDNAEVYANGRAE 250
MQYKNLG+SGLKVS LS+GAWV+FGNQLDV E KS+LQC R+HGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGKSGLKVSTLSFGAWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVYANGRAE 60
Query: 251 EIMGQAIRELGWKRSDIVVSTKIFWGGPGPHDKGLSRKHIVEGTPASLQKLDMEYVDVIY 430
EIMGQAIRELGW+RSDIV+STKIFWGGPGP+DKGLSRKHIVEGT ASL++LDM+YVDV+Y
Sbjct: 61 EIMGQAIRELGWRRSDIVISTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLY 120
Query: 431 CHRPDTSTPIEETVRAMNFVIDQGWAFYWGTSEWSAQQITEAWAVAHR 574
CHRPD STPIEETVRAMN+VID+GWAFYWGTSEWSAQQITEAW A R
Sbjct: 121 CHRPDASTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGAADR 168
>gb|AAA87294.1| K+ channel protein
Length = 328
Score = 310 bits (793), Expect = 1e-83
Identities = 143/168 (85%), Positives = 157/168 (93%)
Frame = +2
Query: 71 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDV*ETKSLLQCWREHGVNFFDNAEVYANGRAE 250
MQYKNLG+SGLKVS LS+GAWV+FGNQLDV E KS+LQC R+HGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGKSGLKVSTLSFGAWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVYANGRAE 60
Query: 251 EIMGQAIRELGWKRSDIVVSTKIFWGGPGPHDKGLSRKHIVEGTPASLQKLDMEYVDVIY 430
EIMGQAIRELGW+RSDIV+STKIFWGGPGP+DKGLSRKHIVEGT ASL++LDM+YVDV+Y
Sbjct: 61 EIMGQAIRELGWRRSDIVISTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLY 120
Query: 431 CHRPDTSTPIEETVRAMNFVIDQGWAFYWGTSEWSAQQITEAWAVAHR 574
CHRPD STPIEE VRAMN+VID+GWAFYWG SEWSAQQITEAW A R
Sbjct: 121 CHRPDASTPIEEAVRAMNYVIDKGWAFYWGISEWSAQQITEAWGAADR 168
>emb|CAA12646.1| potassium channel beta subunit [Egeria densa]
Length = 328
Score = 308 bits (788), Expect = 4e-83
Identities = 141/166 (84%), Positives = 156/166 (93%)
Frame = +2
Query: 71 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDV*ETKSLLQCWREHGVNFFDNAEVYANGRAE 250
MQYKNLGRSGL+VSQLSYG+WVSFGNQ+DV E K+LLQC R+HGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGRSGLRVSQLSYGSWVSFGNQVDVKEAKALLQCCRDHGVNFFDNAEVYANGRAE 60
Query: 251 EIMGQAIRELGWKRSDIVVSTKIFWGGPGPHDKGLSRKHIVEGTPASLQKLDMEYVDVIY 430
EIMGQA RELGWKRSD+VVSTKIFWGGPGP+DKGLSRKH+VEG ASL++LDM+YVD++Y
Sbjct: 61 EIMGQAFRELGWKRSDLVVSTKIFWGGPGPNDKGLSRKHVVEGLRASLKRLDMDYVDIVY 120
Query: 431 CHRPDTSTPIEETVRAMNFVIDQGWAFYWGTSEWSAQQITEAWAVA 568
CHRPD STPIEETVRAMN VID+GWAFYWGTSEWS+QQITE WA A
Sbjct: 121 CHRPDASTPIEETVRAMNHVIDRGWAFYWGTSEWSSQQITEPWAAA 166
>gb|AAN31464.1| K+ channel protein [Phytophthora infestans]
Length = 349
Score = 214 bits (544), Expect = 8e-55
Identities = 101/173 (58%), Positives = 137/173 (78%), Gaps = 5/173 (2%)
Frame = +2
Query: 71 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDV*ETKSLLQCWREHGVNFFDNAEVYANGRAE 250
M+Y+ LG +GL VS+LS+G+WV+F NQLD + S+++ ++GVNFFDNAEVYANG++E
Sbjct: 8 MKYRFLGNTGLLVSRLSFGSWVTFDNQLDFEKAYSIMEHAYKNGVNFFDNAEVYANGQSE 67
Query: 251 EIMGQAIR----ELGWKRSDIVVSTKIFWGGP-GPHDKGLSRKHIVEGTPASLQKLDMEY 415
IMG+ ++ W+R D+V+STK+F+G GP+D G SRKHIVEG ASL++ D++Y
Sbjct: 68 LIMGKVVKAGIERKVWEREDLVISTKLFFGTKSGPNDVGNSRKHIVEGMKASLKRFDLDY 127
Query: 416 VDVIYCHRPDTSTPIEETVRAMNFVIDQGWAFYWGTSEWSAQQITEAWAVAHR 574
VD+++CHRPD +TPIEETVRAMNF+I+QGWAFYWGTSEW A+ I EA +A R
Sbjct: 128 VDLVFCHRPDPATPIEETVRAMNFIIEQGWAFYWGTSEWCAKDIIEACEIADR 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,281,408
Number of Sequences: 1393205
Number of extensions: 12680661
Number of successful extensions: 87179
Number of sequences better than 10.0: 2300
Number of HSP's better than 10.0 without gapping: 65472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81650
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
