Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019463A_C01 KMC019463A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63928.1| unknown [Arabidopsis thaliana] 130 1e-29
ref|NP_567214.1| Expressed protein; protein id: At4g01575.1, sup... 130 1e-29
dbj|BAB85233.1| P0425G02.8 [Oryza sativa (japonica cultivar-grou... 127 7e-29
ref|NP_567123.1| expressed protein; protein id: At3g61980.1, sup... 117 1e-25
gb|AAM63186.1| unknown [Arabidopsis thaliana] 115 3e-25
>gb|AAM63928.1| unknown [Arabidopsis thaliana]
Length = 135
Score = 130 bits (326), Expect = 1e-29
Identities = 64/128 (50%), Positives = 84/128 (65%), Gaps = 8/128 (6%)
Frame = -2
Query: 547 LAVFALCIIIFPAVSTA----ELEEPSVLQLPSFTAGEEQS---LCP-LTTPSSCPAKCF 392
LAV A +I +S+ E +++LPS E++ C + P+SCP +CF
Sbjct: 8 LAVIAFLFLILLNLSSVFADPSTEGGEIIRLPSEKINGEKNRGEFCEGIAKPASCPVQCF 67
Query: 391 RTDPVCGADGVTYWCGCAEAACAGAKVAKLGFCEVGNGGTAPLPGQALLLVHIVWLIVLG 212
R DPVCG D VTYWCGCA+A C G +V K G C+VGNG +PGQALLL+HIVW+++LG
Sbjct: 68 RPDPVCGEDSVTYWCGCADALCHGVRVVKQGACDVGNGVGLSVPGQALLLIHIVWMMLLG 127
Query: 211 FSVLFGLF 188
FS+LFGLF
Sbjct: 128 FSILFGLF 135
>ref|NP_567214.1| Expressed protein; protein id: At4g01575.1, supported by cDNA:
29072. [Arabidopsis thaliana]
Length = 144
Score = 130 bits (326), Expect = 1e-29
Identities = 64/128 (50%), Positives = 84/128 (65%), Gaps = 8/128 (6%)
Frame = -2
Query: 547 LAVFALCIIIFPAVSTA----ELEEPSVLQLPSFTAGEEQS---LCP-LTTPSSCPAKCF 392
LAV A +I +S+ E +++LPS E++ C + P+SCP +CF
Sbjct: 17 LAVIAFLFLILLNLSSVFADPSTEGGEIIRLPSEKINGEKNRGEFCEGIAKPASCPVQCF 76
Query: 391 RTDPVCGADGVTYWCGCAEAACAGAKVAKLGFCEVGNGGTAPLPGQALLLVHIVWLIVLG 212
R DPVCG D VTYWCGCA+A C G +V K G C+VGNG +PGQALLL+HIVW+++LG
Sbjct: 77 RPDPVCGEDSVTYWCGCADALCHGVRVVKQGACDVGNGVGLSVPGQALLLIHIVWMMLLG 136
Query: 211 FSVLFGLF 188
FS+LFGLF
Sbjct: 137 FSILFGLF 144
>dbj|BAB85233.1| P0425G02.8 [Oryza sativa (japonica cultivar-group)]
gi|20160706|dbj|BAB89649.1| P0468B07.28 [Oryza sativa
(japonica cultivar-group)]
Length = 128
Score = 127 bits (320), Expect = 7e-29
Identities = 67/118 (56%), Positives = 77/118 (64%)
Frame = -2
Query: 547 LAVFALCIIIFPAVSTAELEEPSVLQLPSFTAGEEQSLCPLTTPSSCPAKCFRTDPVCGA 368
LA +L A S+AE E P G E LCP+ +CFR DPVCGA
Sbjct: 18 LASLSLLFAQTLASSSAEAEVSDPCAAPVSDGGSEAQLCPV--------RCFRPDPVCGA 69
Query: 367 DGVTYWCGCAEAACAGAKVAKLGFCEVGNGGTAPLPGQALLLVHIVWLIVLGFSVLFG 194
DGVTYWCGC EAACAGA+VA+ G+CEVG G+AP+ GQALLLVHIVWL VLG +VL G
Sbjct: 70 DGVTYWCGCPEAACAGARVARRGYCEVG-AGSAPVSGQALLLVHIVWLFVLGAAVLLG 126
>ref|NP_567123.1| expressed protein; protein id: At3g61980.1, supported by cDNA:
20358., supported by cDNA: gi_17473698 [Arabidopsis
thaliana] gi|11289352|pir||T47990 hypothetical protein
F21F14.150 - Arabidopsis thaliana
gi|6899896|emb|CAB71905.1| hypothetical protein
[Arabidopsis thaliana] gi|17473699|gb|AAL38306.1|
unknown protein [Arabidopsis thaliana]
gi|21386987|gb|AAM47897.1| unknown protein [Arabidopsis
thaliana]
Length = 117
Score = 117 bits (292), Expect = 1e-25
Identities = 51/84 (60%), Positives = 61/84 (71%), Gaps = 1/84 (1%)
Frame = -2
Query: 436 LCP-LTTPSSCPAKCFRTDPVCGADGVTYWCGCAEAACAGAKVAKLGFCEVGNGGTAPLP 260
+CP + C CFR DPVCG DGVTYWCGC +AAC GA+V K G C+ GN G+A +P
Sbjct: 34 VCPRVKDRGGCTINCFRADPVCGTDGVTYWCGCPDAACHGARVVKKGACDTGNAGSASVP 93
Query: 259 GQALLLVHIVWLIVLGFSVLFGLF 188
GQALLL+HIVWL +LG S+L G F
Sbjct: 94 GQALLLIHIVWLFLLGLSLLVGGF 117
>gb|AAM63186.1| unknown [Arabidopsis thaliana]
Length = 117
Score = 115 bits (288), Expect = 3e-25
Identities = 50/84 (59%), Positives = 60/84 (70%), Gaps = 1/84 (1%)
Frame = -2
Query: 436 LCP-LTTPSSCPAKCFRTDPVCGADGVTYWCGCAEAACAGAKVAKLGFCEVGNGGTAPLP 260
+CP + C CFR DPVCG DGVTYWCGC +AAC G +V K G C+ GN G+A +P
Sbjct: 34 VCPRVKDRGGCTINCFRADPVCGTDGVTYWCGCPDAACHGTRVVKKGACDTGNAGSASVP 93
Query: 259 GQALLLVHIVWLIVLGFSVLFGLF 188
GQALLL+HIVWL +LG S+L G F
Sbjct: 94 GQALLLIHIVWLFLLGLSLLVGGF 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,787,350
Number of Sequences: 1393205
Number of extensions: 12900132
Number of successful extensions: 77974
Number of sequences better than 10.0: 237
Number of HSP's better than 10.0 without gapping: 59694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74942
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
