Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019453A_C01 KMC019453A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00077386.1| hypothetical protein [Methanosarcina barkeri] 34 1.2
dbj|BAB30363.1| unnamed protein product [Mus musculus] 34 1.5
ref|XP_126529.1| RIKEN cDNA 4933404O19 [Mus musculus] 34 1.5
ref|NP_077258.1|ND4L_15606 NADH dehydrogenase subunit 4L [Trichi... 33 2.6
ref|NP_008379.1|ND5_13186 NADH dehydrogenase subunit 5 [Onchocer... 32 5.8
>gb|ZP_00077386.1| hypothetical protein [Methanosarcina barkeri]
Length = 565
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 316 IDIIALSNCFGE*HIVGRCLCYFALFMLASLLHSDSSPFCWMFMLFGFVMLFLG 155
I ++ L+N F + +G L F L L+H PF W+F ++ F+++FLG
Sbjct: 106 IILLMLTNSFHGMYFLGYYLDISKGFPLLVLIHG---PFFWVFYIYSFILIFLG 156
>dbj|BAB30363.1| unnamed protein product [Mus musculus]
Length = 624
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 162 NSITKPNNINIQQNGELSECSREANINKAK*HKHLP--TICHSPKQLLKAIISMTSQ 326
NS+ P++I ++ G+LS S++A KA+ KHLP + +S K +K S+ S+
Sbjct: 127 NSVGSPSSIKLENKGDLSFLSKQAESKKAQ-QKHLPIKQLSYSTKHEIKRKGSLKSE 182
>ref|XP_126529.1| RIKEN cDNA 4933404O19 [Mus musculus]
Length = 624
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 162 NSITKPNNINIQQNGELSECSREANINKAK*HKHLP--TICHSPKQLLKAIISMTSQ 326
NS+ P++I ++ G+LS S++A KA+ KHLP + +S K +K S+ S+
Sbjct: 127 NSVGSPSSIKLENKGDLSFLSKQAESKKAQ-QKHLPIKQLSYSTKHEIKRKGSLKSE 182
>ref|NP_077258.1|ND4L_15606 NADH dehydrogenase subunit 4L [Trichinella spiralis]
gi|13123592|gb|AAK12898.1|AF293969_4 NADH dehydrogenase
subunit 4L [Trichinella spiralis]
Length = 81
Score = 33.1 bits (74), Expect = 2.6
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Frame = -1
Query: 324 VKSLI*LL*VIALENDILLEDVYAILLCLCWLLYY--------IRIVHHFVGCLCYLALL 169
+KS+I LL I +E + L+CLCW Y+ + +VH +G L L ++
Sbjct: 18 LKSIIVLL--------ISMELLSLALMCLCWGCYWVYGVWFLMVMVVHSVIGMLVLLWVI 69
Query: 168 CYF*GGDDI 142
YF GGD +
Sbjct: 70 RYF-GGDKV 77
>ref|NP_008379.1|ND5_13186 NADH dehydrogenase subunit 5 [Onchocerca volvulus]
gi|7432506|pir||T11074 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - nematode (Onchocerca volvulus)
mitochondrion gi|2735946|gb|AAC61621.1| NADH
dehydrogenase subunit 5 [Onchocerca volvulus]
Length = 531
Score = 32.0 bits (71), Expect = 5.8
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Frame = -2
Query: 275 YCWKMFML-----FCFVYVGFSTTFG*FTILL-----DVYVIWLCY-------AISRVEM 147
YC++MF L F F YVGFS+ F+ V+ W + A +R E
Sbjct: 377 YCYRMFFLFRVGAFGFDYVGFSSKLFYFSCFFLVFFSVVFTFWWVFSLLSFSVAFNRFEF 436
Query: 146 TLLLYYIRIVHHFVGRCLCY-VTLF*WRMFM 57
++ +Y+ V+ F G Y V F + FM
Sbjct: 437 LVVYFYLFFVYCFCGYFFRYFVVEFKGKFFM 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,567,902
Number of Sequences: 1393205
Number of extensions: 10072665
Number of successful extensions: 26586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26535
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
