Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019403A_C01 KMC019403A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis] 44 0.002
ref|XP_226807.1| similar to small nuclear ribonucleoprotein poly... 43 0.002
dbj|BAB62551.1| OSJNBa0089K24.8 [Oryza sativa (japonica cultivar... 42 0.004
emb|CAC39317.1| VMP2 protein [Volvox carteri f. nagariensis] 42 0.004
emb|CAB62280.1| hydroxyproline-rich glycoprotein DZ-HRGP [Volvox... 42 0.004
>emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis]
Length = 687
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGPCKC 430
+PP SPP RPPPR P RRSPP P + PP P C
Sbjct: 651 TPPPPSPPPPRPPPRPPPTRRSPP-PTSSPPPPVAVSC 687
Score = 39.7 bits (91), Expect = 0.024
Identities = 19/34 (55%), Positives = 20/34 (57%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
R P R PP RPPPR S PR PP P PP+P
Sbjct: 520 RPPSPRPPP--RPPPRPSSPRPPPPDPSPPPPSP 551
Score = 39.7 bits (91), Expect = 0.024
Identities = 19/35 (54%), Positives = 21/35 (59%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP SPP PPP SPP +PP P PP+P P
Sbjct: 596 SPPPPSPPPPNPPPP-SPPPPNPPPPSPPPPSPPP 629
Score = 39.3 bits (90), Expect = 0.031
Identities = 19/35 (54%), Positives = 21/35 (59%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP +PP PPP SPP SPP P PP+P P
Sbjct: 611 SPPPPNPPPPSPPPP-SPPPPSPPPPNPPPPSPPP 644
Score = 39.3 bits (90), Expect = 0.031
Identities = 19/35 (54%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP SPP PPP +PP SPP P PP P P
Sbjct: 621 SPPPPSPPPPSPPPP-NPPPPSPPPPSPRPPTPPP 654
Score = 38.9 bits (89), Expect = 0.041
Identities = 20/36 (55%), Positives = 20/36 (55%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
R PPR S P PPP SPP SPPSP P P P
Sbjct: 529 RPPPRPSSPR-PPPPDPSPPPPSPPSPPTSPSPPDP 563
Score = 38.5 bits (88), Expect = 0.053
Identities = 19/35 (54%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
+PP SPP PPP SPP SPP P PP P P
Sbjct: 606 NPPPPSPPPPNPPPP-SPPPPSPPPPSPPPPNPPP 639
Score = 38.1 bits (87), Expect = 0.069
Identities = 18/35 (51%), Positives = 21/35 (59%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP +PP PPP +PP SPP P PP+P P
Sbjct: 601 SPPPPNPPPPSPPPP-NPPPPSPPPPSPPPPSPPP 634
Score = 37.0 bits (84), Expect = 0.15
Identities = 21/37 (56%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRS---PPSPGAFPPAPGP 439
PPR PP RPPPR PPR S PP P PP P P
Sbjct: 518 PPR--PPSPRPPPR-PPPRPSSPRPPPPDPSPPPPSP 551
Score = 36.6 bits (83), Expect = 0.20
Identities = 19/35 (54%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP SPP PPP SPP SP P PP+P P
Sbjct: 626 SPPPPSPPPPNPPPP-SPPPPSPRPPTPPPPSPPP 659
Score = 36.2 bits (82), Expect = 0.26
Identities = 18/35 (51%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
S P SPP PPP +PP SPP P PP+P P
Sbjct: 591 SAPPPSPPPPSPPPP-NPPPPSPPPPNPPPPSPPP 624
Score = 36.2 bits (82), Expect = 0.26
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PPSP PP+P P
Sbjct: 618 PPPSPPPPSPPPPSPPPPNPPPPSPP--PPSPRP 649
Score = 35.8 bits (81), Expect = 0.34
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PP SPP SPP P PP+P P
Sbjct: 584 PPSPDPPSAPPP---SPPPPSPPPPNPPPPSPPP 614
Score = 35.4 bits (80), Expect = 0.45
Identities = 17/35 (48%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
S P PP PPPR PP PP+P PP+P P
Sbjct: 477 SAPPSPPPPSPPPPRPPPPSPVPPTP---PPSPRP 508
Score = 35.4 bits (80), Expect = 0.45
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PPSP PP P P
Sbjct: 633 PPPNPPPPSPPPPSPRPPTPPPPSPP--PPRPPP 664
Score = 35.0 bits (79), Expect = 0.59
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLS-----------PPRRSPPSPGAFPPAPGP 439
SPP SPP RPPP PP PP+P PP+P P
Sbjct: 481 SPPPPSPPPPRPPPPSPVPPTPPPSPRPPPSPRPPNPPPRPPSPRP 526
Score = 35.0 bits (79), Expect = 0.59
Identities = 18/35 (51%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
+PP SPP PPP SPP +PP P PP P P
Sbjct: 616 NPPPPSPPPPSPPPP-SPPPPNPPPPS--PPPPSP 647
Score = 33.5 bits (75), Expect = 1.7
Identities = 18/37 (48%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Frame = -1
Query: 543 SPPRRSPPMIRPP--PRLSPPRRSPPSPGAFPPAPGP 439
+PP PP PP P SPP SPP P PP P P
Sbjct: 578 NPPSPDPPSPDPPSAPPPSPPPPSPPPPN--PPPPSP 612
Score = 33.1 bits (74), Expect = 2.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -1
Query: 537 PRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
P +PP PPP PP PPSP PP P P
Sbjct: 589 PPSAPPPSPPPPSPPPPNPPPPSPP--PPNPPP 619
Score = 32.7 bits (73), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (47%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP SP PPP PP R PP P +P P
Sbjct: 641 SPPPPSPRPPTPPPPSPPPPRPPPRPPPTRRSPPP 675
Score = 32.3 bits (72), Expect = 3.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -1
Query: 537 PRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGPCKCSS 424
P PP RPPP PP P P PP P + SS
Sbjct: 499 PPTPPPSPRPPPSPRPPNPPPRPPSPRPPPRPPPRPSS 536
Score = 31.6 bits (70), Expect = 6.5
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 543 SPPRRSPPMIRP-PPRLSPPRRSPPSPGAFPPAPGPCKCS 427
+PP SPP P PP PP PP P PP P P + S
Sbjct: 636 NPPPPSPPPPSPRPPTPPPPSPPPPRP---PPRPPPTRRS 672
Score = 31.6 bits (70), Expect = 6.5
Identities = 18/41 (43%), Positives = 19/41 (45%), Gaps = 7/41 (17%)
Frame = -1
Query: 540 PPRRSPPMIRP------PPRLSPPRRSPPSPGA-FPPAPGP 439
P R PP RP PP PP R PP P + PP P P
Sbjct: 504 PSPRPPPSPRPPNPPPRPPSPRPPPRPPPRPSSPRPPPPDP 544
Score = 31.2 bits (69), Expect = 8.5
Identities = 17/36 (47%), Positives = 18/36 (49%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
R PP PP PPPR P R PP P P +P P
Sbjct: 507 RPPPSPRPP--NPPPR-PPSPRPPPRPPPRPSSPRP 539
>ref|XP_226807.1| similar to small nuclear ribonucleoprotein polypeptide G [Homo
sapiens] [Rattus norvegicus]
Length = 326
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGPCKCSSAEESHH 406
RSPP RSPP R PP PP RSPP+ P P P P S S H
Sbjct: 266 RSPPNRSPPN-RSPPNRCPPNRSPPNRCPPNRSPSCPAPSGSHSCPGSCH 314
Score = 42.4 bits (98), Expect = 0.004
Identities = 24/49 (48%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGPCKCSSAEESH 409
RSPP RSPP R PP SPP R PP+ P PP P C + SH
Sbjct: 261 RSPPNRSPPN-RSPPNRSPPNRCPPNRSPPNRCPPNRSP-SCPAPSGSH 307
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/39 (56%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
RSPP RSPP R PP SPP RSPP+ P PP P
Sbjct: 131 RSPPNRSPPN-RSPPNRSPPNRSPPNRSPPNRSPPNRSP 168
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
RSPP RSPP R PP+ SPP RSPP+ P PP P
Sbjct: 116 RSPPNRSPPN-RCPPKRSPPNRSPPNRSPPNRSPPNRSP 153
Score = 41.6 bits (96), Expect = 0.006
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGPCKCSSAEES 412
RSPP RSPP R PP SPP RSPP+ P PP P S S
Sbjct: 146 RSPPNRSPPN-RSPPNRSPPNRSPPNRCPPNRCPPNRCPSNRSPPNRS 192
Score = 40.0 bits (92), Expect = 0.018
Identities = 21/39 (53%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
R PP RSPP R PP SPP RSPP+ P PP P
Sbjct: 201 RCPPNRSPPN-RSPPNRSPPNRSPPNRCPPNRCPPNRSP 238
Score = 40.0 bits (92), Expect = 0.018
Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPP 451
RSPP RSPP R PP SPP RSPP+ P PP
Sbjct: 246 RSPPNRSPPN-RCPPNRSPPNRSPPNRSPPNRSPP 279
Score = 39.3 bits (90), Expect = 0.031
Identities = 21/39 (53%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
RSPP RSPP R PP PP RSPP+ P PP P
Sbjct: 186 RSPPNRSPPN-RCPPNRCPPNRSPPNRSPPNRSPPNRSP 223
Score = 39.3 bits (90), Expect = 0.031
Identities = 21/39 (53%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
R PP RSPP R PP SPP RSPP+ P PP P
Sbjct: 231 RCPPNRSPPN-RCPPNRSPPNRSPPNRCPPNRSPPNRSP 268
Score = 38.9 bits (89), Expect = 0.041
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
SPP RSPP R PP PP+RSPP+ P PP P
Sbjct: 112 SPPNRSPPN-RSPPNRCPPKRSPPNRSPPNRSPPNRSP 148
Score = 38.9 bits (89), Expect = 0.041
Identities = 20/35 (57%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPP 451
RSPP RSPP R PP SPP R PP+ P PP
Sbjct: 206 RSPPNRSPPN-RSPPNRSPPNRCPPNRCPPNRSPP 239
Score = 38.5 bits (88), Expect = 0.053
Identities = 21/43 (48%), Positives = 22/43 (50%), Gaps = 7/43 (16%)
Frame = -1
Query: 546 RSPPRRSPPMIRP----PPRLSPPRRSPPS---PGAFPPAPGP 439
RSPP RSPP P PP PP RSPP+ P PP P
Sbjct: 211 RSPPNRSPPNRSPPNRCPPNRCPPNRSPPNRCPPNRSPPNRSP 253
Score = 38.1 bits (87), Expect = 0.069
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
R PP RSPP R PP PP RSPP+ P PP P
Sbjct: 241 RCPPNRSPPN-RSPPNRCPPNRSPPNRSPPNRSPPNRSP 278
Score = 34.3 bits (77), Expect = 1.0
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Frame = -1
Query: 546 RSPPRRSPP----MIRPPPRLSPPRRSPPS---PGAFPPAPGP 439
R PP R PP R PP SPP R PP+ P PP P
Sbjct: 171 RCPPNRCPPNRCPSNRSPPNRSPPNRCPPNRCPPNRSPPNRSP 213
>dbj|BAB62551.1| OSJNBa0089K24.8 [Oryza sativa (japonica cultivar-group)]
Length = 1059
Score = 42.4 bits (98), Expect = 0.004
Identities = 21/36 (58%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 543 SPPRRSPPMIRPPP-RLSPPRRSPPSPGAFPPAPGP 439
SPP SPP PPP LSPP PP P PPAP P
Sbjct: 513 SPPAPSPPAPPPPPPALSPPAPPPPPPAPSPPAPLP 548
Score = 38.9 bits (89), Expect = 0.041
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRL-SPPRRSPPSPGAFPPAPGP 439
PP SPP PPP SPP PP P PPAP P
Sbjct: 526 PPALSPPAPPPPPPAPSPPAPLPPPPAPSPPAPPP 560
Score = 37.7 bits (86), Expect = 0.091
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGPC 436
PP SPP PPP P SPP+P PP P PC
Sbjct: 538 PPAPSPPAPLPPP----PAPSPPAPPPPPPPPPPC 568
Score = 36.2 bits (82), Expect = 0.26
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -1
Query: 528 SPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP SPP PP P PPAP P
Sbjct: 507 SPPAPPSPPAPSPPAPPPPPPALSPPAPPP 536
Score = 31.2 bits (69), Expect = 8.5
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
SPP PP P P PP PP P PPAP
Sbjct: 542 SPPAPLPPPPAPSPPAPPPPPPPPPP--CPPAP 572
>emb|CAC39317.1| VMP2 protein [Volvox carteri f. nagariensis]
Length = 588
Score = 42.4 bits (98), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
PP + PP PP R+ PP RSPP P PP P
Sbjct: 526 PPTKPPPKSPPPSRMPPPWRSPPPPRTSPPPP 557
Score = 40.4 bits (93), Expect = 0.014
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
+SPP + PP +PPP+ PP R PP P PP P
Sbjct: 518 KSPPPKPPPPTKPPPKSPPPSRMPP-PWRSPPPP 550
Score = 37.0 bits (84), Expect = 0.15
Identities = 21/47 (44%), Positives = 24/47 (50%), Gaps = 6/47 (12%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPP--RRSPPSPGAFPP----APGPCKCSS 424
+ PP+ PP PPP SPP R SPP P PP P P K S+
Sbjct: 529 KPPPKSPPPSRMPPPWRSPPPPRTSPPPPWRSPPHRRRQPPPRKVSA 575
Score = 35.0 bits (79), Expect = 0.59
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPP---APGPCKCS 427
PP +SPP +PPP PP +SPP P PP +P P + S
Sbjct: 515 PPPKSPPP-KPPPPTKPPPKSPP-PSRMPPPWRSPPPPRTS 553
>emb|CAB62280.1| hydroxyproline-rich glycoprotein DZ-HRGP [Volvox carteri f.
nagariensis]
Length = 409
Score = 42.4 bits (98), Expect = 0.004
Identities = 21/35 (60%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSP-PRRSPPSPGAFPPAPGP 439
PP SPP RPPPR P P SPP P PPAP P
Sbjct: 219 PPSPSPPSPRPPPRRPPFPPPSPPPPRPPPPAPPP 253
Score = 42.0 bits (97), Expect = 0.005
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGPCKCS 427
PP PP + PPP SPP SPP P PP+P P K S
Sbjct: 267 PPPSPPPPLPPPP--SPPPPSPPPPSPLPPSPRPPKPS 302
Score = 40.4 bits (93), Expect = 0.014
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP + PPP PP PPSP PP P P
Sbjct: 86 SPPPPPPPPVPPPPPPPPPPPPPPSPPPPPPPPPP 120
Score = 40.0 bits (92), Expect = 0.018
Identities = 19/36 (52%), Positives = 20/36 (54%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
R PP PP PPP +PPR PPSP PP P P
Sbjct: 330 RPPPPSPPPPRPPPPSPNPPRPPPPSPS--PPKPPP 363
Score = 39.7 bits (91), Expect = 0.024
Identities = 19/36 (52%), Positives = 20/36 (54%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
R PP PP PPP +PPR PPSP PP P P
Sbjct: 310 RPPPPNPPPPRPPPPSPNPPRPPPPSPP--PPRPPP 343
Score = 39.3 bits (90), Expect = 0.031
Identities = 19/34 (55%), Positives = 20/34 (57%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP R PP PPPR PP SPP P PP+P P
Sbjct: 242 PPPRPPPPAPPPPR--PPPPSPPPPLPPPPSPPP 273
Score = 38.5 bits (88), Expect = 0.053
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
R PP PP + PPP PP PPSP PP+P P
Sbjct: 255 RPPPPSPPPPLPPPPSPPPPLPPPPSPP--PPSPPP 288
Score = 38.5 bits (88), Expect = 0.053
Identities = 19/35 (54%), Positives = 20/35 (56%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP R PPSP PP+P P
Sbjct: 167 SPPPSPPPSPPPSPPPSPPPRPPPSP---PPSPPP 198
Score = 38.1 bits (87), Expect = 0.069
Identities = 18/35 (51%), Positives = 20/35 (56%)
Frame = -1
Query: 537 PRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGPCK 433
P R PP PPPR PP +PP P PP+P P K
Sbjct: 328 PPRPPPPSPPPPRPPPPSPNPPRPP--PPSPSPPK 360
Score = 38.1 bits (87), Expect = 0.069
Identities = 18/34 (52%), Positives = 19/34 (54%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP SPP PPSP PP+P P
Sbjct: 136 PPNPPPPPPPPPPSPSPPPSPPPSP---PPSPPP 166
Score = 38.1 bits (87), Expect = 0.069
Identities = 19/35 (54%), Positives = 21/35 (59%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP RPPP +PP PPSP PP+P P
Sbjct: 199 SPPPSPPP--RPPPSPNPPSPRPPSPS--PPSPRP 229
Score = 38.1 bits (87), Expect = 0.069
Identities = 23/44 (52%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Frame = -1
Query: 546 RSPPRR------SPPMIRPPPRLSPPRRS-PPS-PGAFPPAPGP 439
R PPRR SPP RPPP PP R PPS P PP P P
Sbjct: 228 RPPPRRPPFPPPSPPPPRPPPPAPPPPRPPPPSPPPPLPPPPSP 271
Score = 38.1 bits (87), Expect = 0.069
Identities = 19/40 (47%), Positives = 20/40 (49%), Gaps = 4/40 (10%)
Frame = -1
Query: 546 RSPPRRSPPMIRP----PPRLSPPRRSPPSPGAFPPAPGP 439
R PP +PP RP PP PP R PP P PP P P
Sbjct: 207 RPPPSPNPPSPRPPSPSPPSPRPPPRRPPFPPPSPPPPRP 246
Score = 37.7 bits (86), Expect = 0.091
Identities = 18/34 (52%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP R PP PPR PP SPP P PP P P
Sbjct: 337 PPPRPPPPSPNPPRPPPPSPSPPKP---PPPPSP 367
Score = 37.7 bits (86), Expect = 0.091
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP SPP PPP PP PP P PP P P
Sbjct: 106 PPPPSPPPPPPPPPPPPPSPPPPPPPPPPPPPNP 139
Score = 37.4 bits (85), Expect = 0.12
Identities = 18/34 (52%), Positives = 19/34 (54%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP P P SPP R PPSP PP+P P
Sbjct: 188 PPPSPPPSPPPSPPPSPPPRPPPSPN--PPSPRP 219
Score = 37.4 bits (85), Expect = 0.12
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP R PP P P SPP PP P PP+P P
Sbjct: 183 SPPPRPPPSPPPSPPPSPPPSPPPRP---PPSPNP 214
Score = 37.4 bits (85), Expect = 0.12
Identities = 19/36 (52%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 543 SPPRRSPPMIRPP-PRLSPPRRSPPSPGAFPPAPGP 439
SPP PP RPP P SPP PP P PP P P
Sbjct: 223 SPPSPRPPPRRPPFPPPSPPPPRPPPPAPPPPRPPP 258
Score = 37.0 bits (84), Expect = 0.15
Identities = 18/34 (52%), Positives = 19/34 (54%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP R PP PPR PP SPP P PP+P P
Sbjct: 317 PPPRPPPPSPNPPRPPPP--SPPPPRPPPPSPNP 348
Score = 37.0 bits (84), Expect = 0.15
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PPSP PP P P
Sbjct: 101 PPPPPPPPPSPPPPPPPPPPPPPSPPPPPPPPPP 134
Score = 37.0 bits (84), Expect = 0.15
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP PPP PP PP P PP P P
Sbjct: 110 SPPPPPPPPPPPPPSPPPPPPPPPPPPPNPPPPPP 144
Score = 36.6 bits (83), Expect = 0.20
Identities = 17/35 (48%), Positives = 18/35 (50%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP +PP PPP S P PP P PP P P
Sbjct: 45 SPPPGTPPPGVPPPTPSGPEHPPPPPPPPPPPPQP 79
Score = 36.6 bits (83), Expect = 0.20
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPS-PGAFPPAPGP 439
R PP PP PPP PP PPS P PP P P
Sbjct: 245 RPPPPAPPPPRPPPPSPPPPLPPPPSPPPPLPPPPSP 281
Score = 36.6 bits (83), Expect = 0.20
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 540 PPRRSPPMIRP--PPRLSPPRRSPPSPGAFPPAPGP 439
PPR PP P PP SPP PP P PP P P
Sbjct: 318 PPRPPPPSPNPPRPPPPSPPPPRPPPPSPNPPRPPP 353
Score = 36.2 bits (82), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PPSP PP+P P
Sbjct: 155 SPPPSPPPSPPPSPPPSPPPSPPPSP---PPSPPP 186
Score = 36.2 bits (82), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PPSP PP+P P
Sbjct: 151 SPPPSPPPSPPPSPPPSPPPSPPPSP---PPSPPP 182
Score = 35.8 bits (81), Expect = 0.34
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP SP P + PP+P P
Sbjct: 129 PPPPPPPPPNPPPPPPPPPPSPSPPPSPPPSPPP 162
Score = 35.8 bits (81), Expect = 0.34
Identities = 19/37 (51%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = -1
Query: 540 PPRRSPP---MIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP+ SPP RPPP PP R PP P PP P P
Sbjct: 298 PPKPSPPNNPFPRPPPPNPPPPR-PPPPSPNPPRPPP 333
Score = 35.8 bits (81), Expect = 0.34
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP SPP PPP PP PP P PP+P P
Sbjct: 120 PPPPSPPPPPPPPPPPPPNPPPPPPPP-PPSPSP 152
Score = 35.8 bits (81), Expect = 0.34
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PPSP PP+P P
Sbjct: 175 SPPPSPPPSPPPRPPPSPPPSPPPSP---PPSPPP 206
Score = 35.8 bits (81), Expect = 0.34
Identities = 16/34 (47%), Positives = 17/34 (49%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PP+P PP P P
Sbjct: 115 PPPPPPPPPSPPPPPPPPPPPPPNPPPPPPPPPP 148
Score = 35.8 bits (81), Expect = 0.34
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PP P PP P P
Sbjct: 97 PPPPPPPPPPPPPSPPPPPPPPPPPPPSPPPPPP 130
Score = 35.4 bits (80), Expect = 0.45
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -1
Query: 543 SPPR----RSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP R PP PPPR PP +PP P PP+P P
Sbjct: 302 SPPNNPFPRPPPPNPPPPRPPPPSPNPPRPP--PPSPPP 338
Score = 35.4 bits (80), Expect = 0.45
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP PPP PP PP + PP+P P
Sbjct: 124 SPPPPPPPPPPPPPNPPPPPPPPPPSPSPPPSPPP 158
Score = 35.4 bits (80), Expect = 0.45
Identities = 18/35 (51%), Positives = 18/35 (51%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PPSP PP P P
Sbjct: 179 SPPPSPPPRPPPSPPPSPPPSPPPSP---PPRPPP 210
Score = 35.4 bits (80), Expect = 0.45
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PP P PP P P
Sbjct: 92 PPPVPPPPPPPPPPPPPPSPPPPPPPPPPPPPSP 125
Score = 35.4 bits (80), Expect = 0.45
Identities = 18/35 (51%), Positives = 18/35 (51%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PPSP PP P P
Sbjct: 159 SPPPSPPPSPPPSPPPSPPPSPPPSP---PPRPPP 190
Score = 35.0 bits (79), Expect = 0.59
Identities = 19/34 (55%), Positives = 20/34 (57%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPG 442
SPP+ PP PPPR PPRR P P P APG
Sbjct: 357 SPPKPPPPP-SPPPR--PPRRPPRPPRRPPTAPG 387
Score = 35.0 bits (79), Expect = 0.59
Identities = 19/35 (54%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Frame = -1
Query: 540 PPRRSPPMIRPP-PRLSPPRRSPPSPGAFPPAPGP 439
PP SPP PP P SPP PPSP PP+P P
Sbjct: 147 PPSPSPPPSPPPSPPPSPPPSPPPSP---PPSPPP 178
Score = 34.7 bits (78), Expect = 0.77
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 543 SPPRRSPPMIRP-PPRLSPPRRSPPS-PGAFPPAPGP 439
SPP SPP P PP PP+ SPP+ P PP P P
Sbjct: 280 SPPPPSPPPPSPLPPSPRPPKPSPPNNPFPRPPPPNP 316
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/34 (52%), Positives = 19/34 (54%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP SPP PPSP PP+P P
Sbjct: 142 PPPPPPPSPSPPP--SPPPSPPPSP---PPSPPP 170
Score = 34.3 bits (77), Expect = 1.0
Identities = 17/35 (48%), Positives = 18/35 (50%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P PP PPSP PP+P P
Sbjct: 171 SPPPSPPPSPPPSPPPRPPPSPPPSP---PPSPPP 202
Score = 34.3 bits (77), Expect = 1.0
Identities = 17/35 (48%), Positives = 18/35 (50%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
SPP PP P P SPP PP P PP+P P
Sbjct: 163 SPPPSPPPSPPPSPPPSPPPSPPPRP---PPSPPP 194
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 543 SPPRRSPPMIRPP-PRLSPPRRSPPSPGAFPPAP 445
SPP R PP PP PR PP SPPSP P P
Sbjct: 203 SPPPRPPPSPNPPSPR--PPSPSPPSPRPPPRRP 234
Score = 33.1 bits (74), Expect = 2.2
Identities = 15/32 (46%), Positives = 16/32 (49%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
PP PP PPP PP PPSP P+P
Sbjct: 272 PPPLPPPPSPPPPSPPPPSPLPPSPRPPKPSP 303
Score = 32.7 bits (73), Expect = 2.9
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 7/41 (17%)
Frame = -1
Query: 540 PPRRSPPMIRPP-------PRLSPPRRSPPSPGAFPPAPGP 439
PP PP RPP P PP +PP P PP+P P
Sbjct: 288 PPSPLPPSPRPPKPSPPNNPFPRPPPPNPPPPRPPPPSPNP 328
Score = 32.7 bits (73), Expect = 2.9
Identities = 16/34 (47%), Positives = 17/34 (49%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP PP P PP+P P
Sbjct: 96 PPPPPPPPPPPPPPSPPPPPPPPPPP--PPSPPP 127
Score = 32.3 bits (72), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 537 PRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
P R PP PP+ PP PP P PP P
Sbjct: 348 PPRPPPPSPSPPKPPPPPSPPPRPPRRPPRP 378
Score = 32.3 bits (72), Expect = 3.8
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Frame = -1
Query: 546 RSPPRRSPPMI-----RPPPRLSPPRRSPPSPGAFPPAP-GP 439
+ PPRRSP + PP SPP +PP PG PP P GP
Sbjct: 23 KPPPRRSPVVALVETPAAPPPGSPPPGTPP-PGVPPPTPSGP 63
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP SPP PPP + PP PP P PP P P
Sbjct: 82 PPSPSPPP-PPPPPVPPP---PPPPPPPPPPPSP 111
Score = 32.0 bits (71), Expect = 5.0
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PPP PP P P PP P P
Sbjct: 103 PPPPPPPSPPPPPPPPPPPPPSPPPPPPPPPPPP 136
Score = 32.0 bits (71), Expect = 5.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 546 RSPPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAP 445
R PP P PPP SPP+ PP P + PP P
Sbjct: 340 RPPPPSPNPPRPPPPSPSPPK--PPPPPSPPPRP 371
Score = 31.6 bits (70), Expect = 6.5
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP PP SPP PP P PP P P
Sbjct: 71 PPPPPPPQPPLPPSPSPP---PPPPPPVPPPPPP 101
Score = 31.2 bits (69), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
PP PP +PP SP PP P PP P P
Sbjct: 69 PPPPPPPPPQPPLPPSPSPPPPPPPPVPPPPPPP 102
Score = 31.2 bits (69), Expect = 8.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 540 PPRRSPPMIRPPPRLSPPRRSPPSPGAFPPAPGP 439
P PP PPP PP PSP PP P P
Sbjct: 63 PEHPPPPPPPPPPPPQPPLPPSPSPPPPPPPPVP 96
Score = 31.2 bits (69), Expect = 8.5
Identities = 17/43 (39%), Positives = 19/43 (43%), Gaps = 10/43 (23%)
Frame = -1
Query: 543 SPPRRSPPMIRPPPRLSPPRRS----------PPSPGAFPPAP 445
+PP SPP PPP + PP S PP P PP P
Sbjct: 40 APPPGSPPPGTPPPGVPPPTPSGPEHPPPPPPPPPPPPQPPLP 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,222,196
Number of Sequences: 1393205
Number of extensions: 13978840
Number of successful extensions: 167502
Number of sequences better than 10.0: 1556
Number of HSP's better than 10.0 without gapping: 77560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138585
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
