Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019401A_C01 KMC019401A_c01
(399 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20137.1| rrj1 [Oryza sativa] 108 2e-23
gb|AAK39571.1|AC025296_6 putative gamma-lyase [Oryza sativa] 108 2e-23
ref|NP_176647.1| methionine/cystathionine gamma lyase, putative;... 107 4e-23
ref|NP_604313.1| Methionine gamma-lyase [Fusobacterium nucleatum... 44 4e-04
gb|AAK39588.1|AC025296_23 hypothetical protein [Oryza sativa] 44 5e-04
>dbj|BAC20137.1| rrj1 [Oryza sativa]
Length = 337
Score = 108 bits (269), Expect = 2e-23
Identities = 52/68 (76%), Positives = 61/68 (89%)
Frame = -3
Query: 394 QFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKALAGISPGLVRMSLGYIGTLEQKWGQLE 215
+FGLMAVSLGYYETLMSCSGSSTSSEM E++A AGISPGLVRMS+GY GTLEQ+W Q E
Sbjct: 253 RFGLMAVSLGYYETLMSCSGSSTSSEMPPEDRARAGISPGLVRMSVGYNGTLEQRWAQFE 312
Query: 214 KALTRLQE 191
+AL+ +Q+
Sbjct: 313 RALSLMQQ 320
>gb|AAK39571.1|AC025296_6 putative gamma-lyase [Oryza sativa]
Length = 464
Score = 108 bits (269), Expect = 2e-23
Identities = 52/68 (76%), Positives = 61/68 (89%)
Frame = -3
Query: 394 QFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKALAGISPGLVRMSLGYIGTLEQKWGQLE 215
+FGLMAVSLGYYETLMSCSGSSTSSEM E++A AGISPGLVRMS+GY GTLEQ+W Q E
Sbjct: 380 RFGLMAVSLGYYETLMSCSGSSTSSEMPPEDRARAGISPGLVRMSVGYNGTLEQRWAQFE 439
Query: 214 KALTRLQE 191
+AL+ +Q+
Sbjct: 440 RALSLMQQ 447
>ref|NP_176647.1| methionine/cystathionine gamma lyase, putative; protein id:
At1g64660.1, supported by cDNA: gi_15450931, supported
by cDNA: gi_16226490 [Arabidopsis thaliana]
gi|25292080|pir||G96669 protein F1N19.23 [imported] -
Arabidopsis thaliana
gi|6633821|gb|AAF19680.1|AC009519_14 F1N19.23
[Arabidopsis thaliana] gi|15450932|gb|AAK96737.1|
similar to O-succinylhomoserine sulfhydrylase
[Arabidopsis thaliana]
gi|16226491|gb|AAL16181.1|AF428413_1 At1g64660/F1N19_22
[Arabidopsis thaliana]
Length = 441
Score = 107 bits (267), Expect = 4e-23
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = -3
Query: 394 QFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKALAGISPGLVRMSLGYIGTLEQKWGQLE 215
QFG MAVSLGYYETLMSCSGSSTSSE++ +K AGISPGLVRMS+GY+GTLEQKW Q E
Sbjct: 376 QFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYVGTLEQKWTQFE 435
Query: 214 KALTRL 197
KA R+
Sbjct: 436 KAFLRM 441
>ref|NP_604313.1| Methionine gamma-lyase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586] gi|19715077|gb|AAL95612.1| Methionine
gamma-lyase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 395
Score = 44.3 bits (103), Expect = 4e-04
Identities = 26/62 (41%), Positives = 39/62 (61%)
Frame = -3
Query: 382 MAVSLGYYETLMSCSGSSTSSEMNEEEKALAGISPGLVRMSLGYIGTLEQKWGQLEKALT 203
+AVSLG ETL+ S T S +EE+ +AGI+ GLVR+S+G + +E LE+ L
Sbjct: 335 LAVSLGDTETLIQHPASMTHSPYTKEEREVAGITDGLVRLSVG-LENVEDIIADLEQGLE 393
Query: 202 RL 197
++
Sbjct: 394 KI 395
>gb|AAK39588.1|AC025296_23 hypothetical protein [Oryza sativa]
Length = 190
Score = 43.9 bits (102), Expect = 5e-04
Identities = 24/59 (40%), Positives = 34/59 (56%)
Frame = +2
Query: 215 LQLTPFLLQSPNIPKRHPHQTR*DPS*CLLLFIHLTAGATSRARHECLIVSQANRHEPE 391
L+L P LL+ +P H + D +L HL AGA + ARHE L+V++A+ HE E
Sbjct: 14 LELRPPLLERAVVPDGHADEAGGDAGASAVLGRHLAAGAAAGARHEGLVVAEADGHEAE 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,690,420
Number of Sequences: 1393205
Number of extensions: 7908760
Number of successful extensions: 32286
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 27518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31531
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
