Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019394A_C01 KMC019394A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196156.1| ubiquinol-cytochrome C reductase complex ubiqui... 124 3e-28
ref|NP_187697.1| putative ubiquinol-cytochrome C reductase compl... 118 2e-26
sp|P46269|UCRQ_SOLTU Ubiquinol-cytochrome C reductase complex ub... 117 3e-26
dbj|BAA95821.1| EST AU082567(S21715) corresponds to a region of ... 115 9e-26
ref|NP_594714.1| ubiquinol-cytochrome c reductase complex ubiqui... 35 0.28
>ref|NP_196156.1| ubiquinol-cytochrome C reductase complex ubiquinone-binding protein
(QP-C)-like protein (gb|AAF19563.1); protein id:
At5g05370.1 [Arabidopsis thaliana]
gi|10176749|dbj|BAB09980.1| ubiquinol-cytochrome C
reductase complex ubiquinone-binding protein
[Arabidopsis thaliana]
Length = 72
Score = 124 bits (311), Expect = 3e-28
Identities = 58/72 (80%), Positives = 64/72 (88%)
Frame = +1
Query: 25 MGKNIVPVKSVVYALSPFQQKIMSGLWKDLPSKIHHKVSENWISTILLVGPVVGTYAYAQ 204
MGK V +K+VVYALSPFQQKIM+GLWKDLP KIHHKVSENWISTILLV PVVGTY+YAQ
Sbjct: 1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60
Query: 205 NYKENEKLSHRY 240
+KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72
>ref|NP_187697.1| putative ubiquinol-cytochrome C reductase complex
ubiquinone-binding protein (QP-C); protein id:
At3g10860.1, supported by cDNA: 24626. [Arabidopsis
thaliana] gi|6630544|gb|AAF19563.1|AC011708_6 putative
ubiquinol-cytochrome C reductase complex
ubiquinone-binding protein (QP-C) [Arabidopsis thaliana]
gi|21592487|gb|AAM64437.1| putative ubiquinol-cytochrome
C reductase complex ubiquinone-binding protein (QP-C)
[Arabidopsis thaliana] gi|23306448|gb|AAN17451.1|
putative ubiquinol-cytochrome C reductase complex
ubiquinone-binding protein (QP-C) [Arabidopsis thaliana]
Length = 72
Score = 118 bits (295), Expect = 2e-26
Identities = 56/72 (77%), Positives = 61/72 (83%)
Frame = +1
Query: 25 MGKNIVPVKSVVYALSPFQQKIMSGLWKDLPSKIHHKVSENWISTILLVGPVVGTYAYAQ 204
MGK V +K+VVYALSPFQQKIM+GLWKDLP KIHHKVSENWIS LLV PVVGTY YAQ
Sbjct: 1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60
Query: 205 NYKENEKLSHRY 240
+KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72
>sp|P46269|UCRQ_SOLTU Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein
QP-C (Ubiquinol-cytochrome C reductase complex 8.2 kDa
protein) gi|7489284|pir||T07370 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) 8.2K chain - potato
gi|633687|emb|CAA55862.1| ubiquinol--cytochrome c
reductase [Solanum tuberosum] gi|1094912|prf||2107179A
cytochrome c oxidase:SUBUNIT=8.2kD
Length = 72
Score = 117 bits (293), Expect = 3e-26
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = +1
Query: 25 MGKNIVPVKSVVYALSPFQQKIMSGLWKDLPSKIHHKVSENWISTILLVGPVVGTYAYAQ 204
MGK V +K+VVYA+SPFQQKIM GLWKDLP KIHHKVSENWIS LL+GP+VGTY+Y Q
Sbjct: 1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60
Query: 205 NYKENEKLSHRY 240
++ E EKL HRY
Sbjct: 61 HFLEKEKLEHRY 72
>dbj|BAA95821.1| EST AU082567(S21715) corresponds to a region of the predicted
gene.~Similar to S.tuberosum ubiquinol--cytochrome c
reductase. (X79275) [Oryza sativa (japonica
cultivar-group)] gi|8096328|dbj|BAA95831.1| EST
AU082567(S21715) corresponds to a region of the
predicted gene.~Similar to S.tuberosum ubiquinol
cytochrome c reductase. (X79275) [Oryza sativa (japonica
cultivar-group)]
Length = 72
Score = 115 bits (289), Expect = 9e-26
Identities = 53/72 (73%), Positives = 60/72 (82%)
Frame = +1
Query: 25 MGKNIVPVKSVVYALSPFQQKIMSGLWKDLPSKIHHKVSENWISTILLVGPVVGTYAYAQ 204
MGK V +K+VVYALSPFQQK+M GLWKD+ +KIHHKVSENWIS LL+ P+VGTY YA
Sbjct: 1 MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYEYAM 60
Query: 205 NYKENEKLSHRY 240
YKE EKLSHRY
Sbjct: 61 YYKEQEKLSHRY 72
>ref|NP_594714.1| ubiquinol-cytochrome c reductase complex ubiquinone-binding protein
qp-c [Schizosaccharomyces pombe]
gi|1717959|sp|P50523|UCRQ_SCHPO Ubiquinol-cytochrome C
reductase complex ubiquinone-binding protein QP-C
(Ubiquinol-cytochrome C reductase complex 11 kDa
protein) (Complex III subunit VIII)
gi|11292190|pir||T50097 ubiquinol-cytochrome-c reductase
(EC 1.10.2.2) chain VIII [validated] - fission yeast
(Schizosaccharomyces pombe) gi|1166462|gb|AAA85691.1|
ubiquinol-cytochrome c oxidoreductase subunit VIII
gi|7160231|emb|CAB76269.1| ubiquinol-cytochrome c
reductase complex ubiquinone-binding protein qp-c
[Schizosaccharomyces pombe] gi|1096931|prf||2113195A
ubiquinol-cytochrome c oxidoreductase:SUBUNIT=VIII
Length = 92
Score = 34.7 bits (78), Expect = 0.28
Identities = 18/66 (27%), Positives = 33/66 (49%)
Frame = +1
Query: 55 VVYALSPFQQKIMSGLWKDLPSKIHHKVSENWISTILLVGPVVGTYAYAQNYKENEKLSH 234
+ Y+LSPFQQ+ M+G +K + +V + + G + Y Y + NE L+
Sbjct: 26 ITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFG--IAYYIYCWGKERNEFLNS 83
Query: 235 RY*AHV 252
++ H+
Sbjct: 84 KHGRHL 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,956,199
Number of Sequences: 1393205
Number of extensions: 8305892
Number of successful extensions: 26361
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 25705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26357
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
