Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019386A_C01 KMC019386A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG08959.1|AF122051_1 tuber-specific and sucrose-responsive e... 231 4e-60
dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum] 231 7e-60
ref|NP_195443.1| myb DNA-binding protein (AtMYB73); protein id: ... 230 9e-60
gb|AAM65553.1| putative MYB family transcription factor [Arabido... 227 1e-58
ref|NP_179910.1| MYB family transcription factor; protein id: At... 226 2e-58
>gb|AAG08959.1|AF122051_1 tuber-specific and sucrose-responsive element binding factor
[Solanum tuberosum]
Length = 364
Score = 231 bits (590), Expect = 4e-60
Identities = 114/152 (75%), Positives = 124/152 (81%), Gaps = 10/152 (6%)
Frame = +1
Query: 172 MDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 351
MDR+KGPWSPEEDE LQ+LV++HGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF
Sbjct: 1 MDRVKGPWSPEEDELLQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 60
Query: 352 TPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLAAGGG 531
TPEED+TIIRAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCSS+ A +
Sbjct: 61 TPEEDETIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSLSADEGNELADQ 120
Query: 532 GGDFCPQPLKRSASAG----------LPGSPA 597
+ PLKRS SAG PGSP+
Sbjct: 121 IFENQQPPLKRSVSAGSAMPVSGFHFSPGSPS 152
>dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum]
Length = 329
Score = 231 bits (588), Expect = 7e-60
Identities = 116/154 (75%), Positives = 127/154 (82%), Gaps = 9/154 (5%)
Frame = +1
Query: 163 RKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 342
RKE DRIKGPWSPEEDE LQ LVE+HGPRNWSLISKS+PGRSGKSCRLRWCNQLSPQVEH
Sbjct: 7 RKESDRIKGPWSPEEDELLQSLVEKHGPRNWSLISKSVPGRSGKSCRLRWCNQLSPQVEH 66
Query: 343 RAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLAA 522
RAFT EED+TIIRAHA+FGNKWATIARLLSGRTDNAIKNHWNSTLKRKC S+ ++DL+
Sbjct: 67 RAFTSEEDETIIRAHAKFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSM--SEDLSF 124
Query: 523 GGGGGDFCPQPLKRSASAG---------LPGSPA 597
+ QPLKRS+S G PGSP+
Sbjct: 125 -----ETPQQPLKRSSSVGPSTNFSSGMNPGSPS 153
>ref|NP_195443.1| myb DNA-binding protein (AtMYB73); protein id: At4g37260.1,
supported by cDNA: gi_17380911, supported by cDNA:
gi_20258980 [Arabidopsis thaliana]
gi|25294084|pir||C85440 myb-related protein [imported] -
Arabidopsis thaliana gi|2464855|emb|CAB16756.1|
myb-related protein [Arabidopsis thaliana]
gi|7270709|emb|CAB80392.1| myb-related protein
[Arabidopsis thaliana] gi|17380912|gb|AAL36268.1|
putative myb-related protein [Arabidopsis thaliana]
gi|20258981|gb|AAM14206.1| putative myb-related protein
[Arabidopsis thaliana]
Length = 320
Score = 230 bits (587), Expect = 9e-60
Identities = 114/157 (72%), Positives = 127/157 (80%), Gaps = 11/157 (7%)
Frame = +1
Query: 160 TRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 339
TRK M+RIKGPWSPEED+ LQ+LV++HGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VE
Sbjct: 5 TRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVE 64
Query: 340 HRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLA 519
HRAF+ EED+TIIRAHARFGNKWATI+RLL+GRTDNAIKNHWNSTLKRKCS + D
Sbjct: 65 HRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFG 124
Query: 520 AGGG--GGDFCPQPLKRSASAG---------LPGSPA 597
GG G QPLKR+AS G PGSP+
Sbjct: 125 GNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPS 161
>gb|AAM65553.1| putative MYB family transcription factor [Arabidopsis thaliana]
Length = 309
Score = 227 bits (578), Expect = 1e-58
Identities = 115/157 (73%), Positives = 122/157 (77%), Gaps = 17/157 (10%)
Frame = +1
Query: 160 TRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 339
TRKEMDRIKGPWSPEED+ LQ LV++HGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VE
Sbjct: 5 TRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVE 64
Query: 340 HRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLA 519
HR FT EEDDTII AHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS
Sbjct: 65 HRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS--------- 115
Query: 520 AGGGGG------DF-----------CPQPLKRSASAG 579
GGGGG DF +PLKR+AS G
Sbjct: 116 GGGGGGEEGQSCDFGGNGGYDGNLTDEKPLKRTASGG 152
>ref|NP_179910.1| MYB family transcription factor; protein id: At2g23290.1, supported
by cDNA: 40307. [Arabidopsis thaliana]
gi|7438326|pir||T00503 probable MYB family transcription
factor [imported] - Arabidopsis thaliana
gi|2642435|gb|AAB87103.1| MYB family transcription
factor [Arabidopsis thaliana]
gi|26449625|dbj|BAC41938.1| putative MYB family
transcription factor [Arabidopsis thaliana]
Length = 309
Score = 226 bits (576), Expect = 2e-58
Identities = 115/157 (73%), Positives = 121/157 (76%), Gaps = 17/157 (10%)
Frame = +1
Query: 160 TRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 339
TRKEMDRIKGPWSPEED+ LQ LV++HGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VE
Sbjct: 5 TRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVE 64
Query: 340 HRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLA 519
HR FT EEDDTII AHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS
Sbjct: 65 HRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS--------- 115
Query: 520 AGGGGG------DF-----------CPQPLKRSASAG 579
GGGGG DF +PLKR AS G
Sbjct: 116 GGGGGGEEGQSCDFGGNGGYDGNLTDEKPLKRRASGG 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.128 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,311,557
Number of Sequences: 1393205
Number of extensions: 14422189
Number of successful extensions: 89303
Number of sequences better than 10.0: 1075
Number of HSP's better than 10.0 without gapping: 63824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83611
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
