Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019343A_C01 KMC019343A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194701.1| putative protein; protein id: At4g29720.1, supp... 114 3e-25
gb|AAO16558.1| putative polyamine oxidase [Brassica juncea] 108 1e-23
dbj|BAB39414.1| P0456F08.14 [Oryza sativa (japonica cultivar-gro... 102 1e-21
ref|XP_215108.1| similar to peroxisomal N1-acetyl-spermine/sperm... 92 1e-18
ref|XP_133921.1| expressed sequence AI118225 [Mus musculus] 92 2e-18
>ref|NP_194701.1| putative protein; protein id: At4g29720.1, supported by cDNA:
158028. [Arabidopsis thaliana] gi|7487099|pir||T09935
hypothetical protein T16L4.230 - Arabidopsis thaliana
gi|5123566|emb|CAB45332.1| putative protein [Arabidopsis
thaliana] gi|7269871|emb|CAB79730.1| putative protein
[Arabidopsis thaliana] gi|21553705|gb|AAM62798.1|
unknown [Arabidopsis thaliana]
gi|26451452|dbj|BAC42825.1| unknown protein [Arabidopsis
thaliana] gi|28973193|gb|AAO63921.1| unknown protein
[Arabidopsis thaliana]
Length = 533
Score = 114 bits (285), Expect = 3e-25
Identities = 56/80 (70%), Positives = 61/80 (76%), Gaps = 10/80 (12%)
Frame = -1
Query: 451 GSYSYVAVGSSGDDLDTMAEPLPS----------KDSTFQHPLQILFAGEATHRTHYSTT 302
GSYSYVAVGSSGDDLD MAEPLP D H LQ++FAGEATHRTHYSTT
Sbjct: 452 GSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTT 511
Query: 301 HGAYFSGLREAHRLLQHYPC 242
HGAY+SGLREA+RLL+HY C
Sbjct: 512 HGAYYSGLREANRLLKHYKC 531
>gb|AAO16558.1| putative polyamine oxidase [Brassica juncea]
Length = 541
Score = 108 bits (270), Expect = 1e-23
Identities = 54/80 (67%), Positives = 60/80 (74%), Gaps = 10/80 (12%)
Frame = -1
Query: 451 GSYSYVAVGSSGDDLDTMAEPLPSKDSTFQH----------PLQILFAGEATHRTHYSTT 302
GSYSYVAVGSSGDDLD MAEPLP + LQ++FAGEATHRTHYSTT
Sbjct: 460 GSYSYVAVGSSGDDLDAMAEPLPQINKKSGQVNGHGQAKVRELQVMFAGEATHRTHYSTT 519
Query: 301 HGAYFSGLREAHRLLQHYPC 242
HGAY+SGLREA+RLL+HY C
Sbjct: 520 HGAYYSGLREANRLLKHYKC 539
>dbj|BAB39414.1| P0456F08.14 [Oryza sativa (japonica cultivar-group)]
Length = 529
Score = 102 bits (253), Expect = 1e-21
Identities = 53/73 (72%), Positives = 58/73 (78%), Gaps = 5/73 (6%)
Frame = -1
Query: 451 GSYSYVAVGSSGDDLDTMAEPLP-----SKDSTFQHPLQILFAGEATHRTHYSTTHGAYF 287
GSYSYVAVGSSGDDLD MAEPLP + D P ++LFAGEATHRTHYSTTH AY
Sbjct: 433 GSYSYVAVGSSGDDLDRMAEPLPRGPDAAADERPPSP-RLLFAGEATHRTHYSTTHAAYL 491
Query: 286 SGLREAHRLLQHY 248
SG+REA+RLLQHY
Sbjct: 492 SGVREANRLLQHY 504
>ref|XP_215108.1| similar to peroxisomal N1-acetyl-spermine/spermidine oxidase [Mus
musculus] [Rattus norvegicus]
Length = 121
Score = 92.4 bits (228), Expect = 1e-18
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = -1
Query: 451 GSYSYVAVGSSGDDLDTMAEPLPSKDSTFQHPLQILFAGEATHRTHYSTTHGAYFSGLRE 272
GSYSYVAVGS+GDDLD MA+PLP+ + Q LQ+LFAGEATHRT YSTTHGA SG RE
Sbjct: 45 GSYSYVAVGSTGDDLDLMAQPLPADGTGTQ--LQVLFAGEATHRTFYSTTHGALLSGWRE 102
Query: 271 AHRLL 257
A RL+
Sbjct: 103 ADRLI 107
>ref|XP_133921.1| expressed sequence AI118225 [Mus musculus]
Length = 504
Score = 91.7 bits (226), Expect = 2e-18
Identities = 47/65 (72%), Positives = 52/65 (79%)
Frame = -1
Query: 451 GSYSYVAVGSSGDDLDTMAEPLPSKDSTFQHPLQILFAGEATHRTHYSTTHGAYFSGLRE 272
GSYSYVAVGS+GDDLD MA+PLP + Q LQ+LFAGEATHRT YSTTHGA SG RE
Sbjct: 428 GSYSYVAVGSTGDDLDLMAQPLPEDGTGTQ--LQVLFAGEATHRTFYSTTHGALLSGWRE 485
Query: 271 AHRLL 257
A RL+
Sbjct: 486 ADRLV 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,865,603
Number of Sequences: 1393205
Number of extensions: 7474678
Number of successful extensions: 27149
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 24485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26654
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
