Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019339A_C01 KMC019339A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190428.1| transcription factor Hap5a; protein id: At3g485... 127 1e-28
emb|CAA74054.1| Transcription factor [Arabidopsis thaliana] 127 1e-28
ref|NP_201152.1| transcription factor Hap5a-like protein; protei... 119 2e-26
dbj|BAA81759.1| Similar to sequence of BAC F7G19 from Arabidopsi... 37 0.21
ref|NP_172371.1| putative transcription factor; protein id: At1g... 37 0.21
>ref|NP_190428.1| transcription factor Hap5a; protein id: At3g48590.1, supported by
cDNA: 21604., supported by cDNA: gi_20260195
[Arabidopsis thaliana] gi|11358886|pir||T46203
transcription factor Hap5a - Arabidopsis thaliana
gi|6523090|emb|CAB62348.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|20260196|gb|AAM12996.1|
transcription factor Hap5a [Arabidopsis thaliana]
gi|21554251|gb|AAM63326.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|24899757|gb|AAN65093.1|
transcription factor Hap5a [Arabidopsis thaliana]
Length = 234
Score = 127 bits (318), Expect = 1e-28
Identities = 68/94 (72%), Positives = 74/94 (78%), Gaps = 12/94 (12%)
Frame = -3
Query: 555 IVPRDEIKEEASL------VAAAASGVPYYYPPMGQPAG---MMIGRPAMDPATGVYVQP 403
IVPRDEIK+EA++ VA ASGVPYYYPPMGQPAG MMIGRPAMDP GVYVQP
Sbjct: 140 IVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRPAMDP-NGVYVQP 198
Query: 402 PSQAWQSVWQTA---ADDGSYGTAGTSGQPNLDG 310
PSQAWQSVWQT+ DD SYG+ G+SGQ NLDG
Sbjct: 199 PSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDG 232
>emb|CAA74054.1| Transcription factor [Arabidopsis thaliana]
Length = 155
Score = 127 bits (318), Expect = 1e-28
Identities = 68/94 (72%), Positives = 74/94 (78%), Gaps = 12/94 (12%)
Frame = -3
Query: 555 IVPRDEIKEEASL------VAAAASGVPYYYPPMGQPAG---MMIGRPAMDPATGVYVQP 403
IVPRDEIK+EA++ VA ASGVPYYYPPMGQPAG MMIGRPAMDP GVYVQP
Sbjct: 61 IVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRPAMDP-NGVYVQP 119
Query: 402 PSQAWQSVWQTA---ADDGSYGTAGTSGQPNLDG 310
PSQAWQSVWQT+ DD SYG+ G+SGQ NLDG
Sbjct: 120 PSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDG 153
>ref|NP_201152.1| transcription factor Hap5a-like protein; protein id: At5g63470.1,
supported by cDNA: gi_18252934 [Arabidopsis thaliana]
gi|9758288|dbj|BAB08812.1| transcription factor
Hap5a-like protein [Arabidopsis thaliana]
gi|18252935|gb|AAL62394.1| transcription factor
Hap5a-like protein [Arabidopsis thaliana]
gi|23198020|gb|AAN15537.1| transcription factor
Hap5a-like protein [Arabidopsis thaliana]
Length = 250
Score = 119 bits (299), Expect = 2e-26
Identities = 65/96 (67%), Positives = 71/96 (73%), Gaps = 15/96 (15%)
Frame = -3
Query: 555 IVPRDEIKEE---------ASLVAAAASGVPYYYPPMGQPA---GMMIGRPAMDPATGVY 412
IVPR+EIKEE +VA AASGVPYYYPPMGQPA GMMIGRPAMDP+ GVY
Sbjct: 153 IVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPAVPGGMMIGRPAMDPS-GVY 211
Query: 411 VQPPSQAWQSVWQTAA---DDGSYGTAGTSGQPNLD 313
QPPSQAWQSVWQ +A DD SYG+ G+SG NLD
Sbjct: 212 AQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLD 247
>dbj|BAA81759.1| Similar to sequence of BAC F7G19 from Arabidopsis thaliana.
(AC000106) [Oryza sativa (japonica cultivar-group)]
Length = 205
Score = 36.6 bits (83), Expect = 0.21
Identities = 24/51 (47%), Positives = 28/51 (54%)
Frame = -3
Query: 555 IVPRDEIKEEASLVAAAASGVPYYYPPMGQPAGMMIGRPAMDPATGVYVQP 403
IVPRDE K +A AA A+G+P+ PA G PA DP YVQP
Sbjct: 165 IVPRDEAK-DAEAAAAVAAGIPH-------PAA---GLPATDPMAYYYVQP 204
>ref|NP_172371.1| putative transcription factor; protein id: At1g08970.1, supported
by cDNA: 1911. [Arabidopsis thaliana]
gi|21553992|gb|AAM63073.1| putative transcription factor
[Arabidopsis thaliana] gi|22022532|gb|AAM83224.1|
At1g08970/F7G19_16 [Arabidopsis thaliana]
gi|23505813|gb|AAN28766.1| At1g08970/F7G19_16
[Arabidopsis thaliana]
Length = 231
Score = 36.6 bits (83), Expect = 0.21
Identities = 27/78 (34%), Positives = 39/78 (49%), Gaps = 12/78 (15%)
Frame = -3
Query: 555 IVPRDEIKEEA-------SLVAAAASGVPYYY-----PPMGQPAGMMIGRPAMDPATGVY 412
IVPR+++++E ++ AAA+G PY Y P+G P GM++G P G Y
Sbjct: 155 IVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNP-GMVMGNPG-----GAY 208
Query: 411 VQPPSQAWQSVWQTAADD 358
P Q +WQ A D
Sbjct: 209 PPNPYMG-QPMWQQQAPD 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,994,670
Number of Sequences: 1393205
Number of extensions: 11447202
Number of successful extensions: 43619
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 40111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43419
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
