Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019263A_C01 KMC019263A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_493664.1| Pleckstrin homology domain protein [Caenorhabdi... 32 7.0
>ref|NP_493664.1| Pleckstrin homology domain protein [Caenorhabditis elegans]
gi|14625210|gb|AAB71008.2| Hypothetical protein K10B4.3
[Caenorhabditis elegans]
Length = 827
Score = 31.6 bits (70), Expect = 7.0
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 181 NAPTVQSCVLDRYCHS*CNQSYRSRSTLQLSRQS 282
++PTV+ C LDR HS Q +RS+ LSR+S
Sbjct: 375 DSPTVELCELDRNTHSLAMQYQNNRSSGSLSRRS 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,354,942
Number of Sequences: 1393205
Number of extensions: 9582237
Number of successful extensions: 22527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22515
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
